Query= MSMg01no335_n02.b1 MSMg01no335_n02.b1 CHROMAT_FILE:
MSMg01no335_n02.b1 PHD_FILE: MSMg01no335_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:42 2005
(551 letters)
>mm_chr5_88268467_88269417
Length = 951
Score = 1015 bits (525), Expect = 0.0
Identities = 542/549 (98%), Gaps = 4/549 (0%)
Strand = Plus / Plus
Query: 5 gaattcactcggtttc--ccggattcttctacagcaaagctttattgcttcatctgaagg 62
|||||||||||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattcactcgg--acaaccggattcttctacggcaaagctttattgcttcatctgaagg 262
Query: 63 aagaccccgaacaaggaaaatggtgccacctatatacccctccgtgtgacgtgtcagcta 122
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 263 aagaccccgaacaaggaaaatggtgccacctatatatccctccgtgtgacgtgtcagcta 322
Query: 123 ccgattagctgctcactcatcaccccactactatgtcccgggatgggcagtgacttggca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccgattagctgctcactcatcaccccactactatgtcccgggatgggcagtgacttggca 382
Query: 183 cgaatttactcttgcacctgtgcacattactagtttaccagttaggcacagcggaggctc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cgaatttactcttgcacctgtgcacattactagtttaccagttaggcacagcggaggctc 442
Query: 243 atgatggcgattgctcacggctctccacagattttaatcatatttgccactcttccctca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atgatggcgattgctcacggctctccacagattttaatcatatttgccactcttccctca 502
Query: 303 atatctctggcttttatatgggtgctggggataaaatgtagggcaacaggcttgcacagc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atatctctggcttttatatgggtgctggggataaaatgtagggcaacaggcttgcacagc 562
Query: 363 agaaactttgctgattgagccatctcctcagccctgtatatcatgttggtctttacattt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agaaactttgctgattgagccatctcctcagccctgtatatcatgttggtctttacattt 622
Query: 423 tatttgtttatataatgttccttttaaaaattttttccatacaatgaattttgatcatgc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatttgtttatataatgttccttttaaaaattttttccatacaatgaattttgatcatgc 682
Query: 483 atcttctccctcctcaccccaagtcttcgaaaattctccccacctccatatccacccaac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atcttctccctcctcaccccaagtcttcgaaaattctccccacctccatatccacccaac 742
Query: 543 ttcatattc 551
|||||||||
Sbjct: 743 ttcatattc 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_n02.g1 MSMg01no335_n02.g1 CHROMAT_FILE:
MSMg01no335_n02.g1 PHD_FILE: MSMg01no335_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:42 2005
(534 letters)
>mm_chr5_88427193_88428124
Length = 932
Score = 859 bits (444), Expect = 0.0
Identities = 513/540 (95%), Gaps = 8/540 (1%)
Strand = Plus / Minus
Query: 1 acttgtgtttcagtatctcttttgtagtattcctaagtttatcttaattttggcttaa-- 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 acttgtgtttcagtatctcttttgtagtattcctaagtttatcttaattttggcttaatt 739
Query: 59 ----tatttttttgagaattttgtaattagcacgacagctagagcacacttactcttctt 114
| ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct: 738 tttttttttttttgagaattttgtaattagcactacagctaaagcacacttacccttctc 679
Query: 115 tttaccctctctagtgtttgtatgtctgcttccactttcatgacttttatttgcttatta 174
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 678 tttaccctctctagtgtttgtatgcctgcttccactttcatgacttttatttgcttatta 619
Query: 175 ttattgttagaaatatacacatgtgtctatgaatatccatttaggcatatattaatatga 234
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 618 ttattgttagaaatatacacatgtgtctatgaatatccatttaggcatatatttatatga 559
Query: 235 aaatatacgtaaataactgctgaatttatttagcttttatatgtgtgtgtgtgtccagag 294
|||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 558 aaatatacataaataactgctgaatttatttagcttttata--tgtgtgtgtatccagag 501
Query: 295 ttgaatacttgggattggaaagcttatgtgagtgcttgtccctggaggagactgagtctc 354
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgaatacttgggattggacagcttatgtgagtgcttgtccctggaggagactgagtctc 441
Query: 355 cttttcttaacagctattaatcacctgtggttcttcatctgatcatggaactatgtaaga 414
|||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 ctttccttagcagctattaatcacctgcagttcttcatctgatcatggaactatgtaaga 381
Query: 415 tgtcccctgatcatgtaggtgtgtaacctggtgctgtcgttacgctggccagttctaaat 474
| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 380 tttcccctgatcatgtaggtgtgtaacctggtgctgtcattatgctggccagttctaaat 321
Query: 475 cgttagatataaatatagctctcactcatcaaaaaagatttccctttcctttaaattcaa 534
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 320 ggttagatataaatatagctctcactcatcaaaaaagatttcccttttctttaaattcaa 261
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 932
Length adjustment: 10
Effective length of query: 524
Effective length of database: 922
Effective search space: 483128
Effective search space used: 483128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
