Query= MSMg01no336_e13.b1 MSMg01no336_e13.b1 CHROMAT_FILE:
MSMg01no336_e13.b1 PHD_FILE: MSMg01no336_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:18 2005
(562 letters)
>mm_chr5_7265274_7266232
Length = 959
Score = 917 bits (474), Expect = 0.0
Identities = 497/506 (98%), Gaps = 3/506 (0%)
Strand = Plus / Minus
Query: 57 ctcttgggcatatatgcaaaggattctattttacaacagaaatacctgatcttctatgtt 116
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 ctcttgggcatgtatgccaaggattctattttacaacagaaatacctgatcttctatgtt 900
Query: 117 taatactgagaaactcaacaatagtcaaacactgaaactatctacaagtccatcagtgga 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 899 taatactgagaaactcaacaatagtcaaacactgaaactatctacaagtccatcagttga 840
Query: 177 ggaacagataatgaaactatatgctacatttacacaatggcatactcctcaggtgttaag 236
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 839 ggaacagataatgaaactatatgctacatttatacaatggcatactcctcaggtgttaag 780
Query: 237 ctattaaagactctgaaattaaataccactgtaaaagaaatttaaatggagtaaataaat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ctattaaagactctgaaattaaataccactgtaaaagaaatttaaatggagtaaataaat 720
Query: 297 atactttgaagaaatttcttttagttccttctgtttctatatgtcaatactgtctcctta 356
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 719 atactttgaagaaatttcttttagtcccttctgtttctatatgtcaatactgtctcctta 660
Query: 357 aagcctgcctgtaatttgtcaaaaagctaacaacaattttctgattcagattctactttc 416
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 659 aagcctgcctgtaatttgtcaaaaagct---aacaattttctgattcagattctactttc 603
Query: 417 tgttaacatggacccacctataacagcctctgacatctattacagtttctgacacagaac 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgttaacatggacccacctataacagcctctgacatctattacagtttctgacacagaac 543
Query: 477 atatcaggaaaagatcttaatttgcttaagcatttgttttctatgaagtcggtgtttacc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atatcaggaaaagatcttaatttgcttaagcatttgttttctatgaagtcggtgtttacc 483
Query: 537 tgaatagctcacaaaacttcctcata 562
||||||||||||||||||||| ||||
Sbjct: 482 tgaatagctcacaaaacttccccata 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 959
Length adjustment: 10
Effective length of query: 552
Effective length of database: 949
Effective search space: 523848
Effective search space used: 523848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_e13.g1 MSMg01no336_e13.g1 CHROMAT_FILE:
MSMg01no336_e13.g1 PHD_FILE: MSMg01no336_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:19 2005
(546 letters)
>mm_chr5_7102120_7103065
Length = 946
Score = 1017 bits (526), Expect = 0.0
Identities = 541/546 (99%)
Strand = Plus / Plus
Query: 1 agtctcaatccatgtttacctaggatgtacaaaaaatgacacactactggataataacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctcaatccatgtttacctaggatgtacaaaaaatgacacactactggataataacaa 260
Query: 61 aattctaaataacaaatactctcaaattacctcagtgaataacaaatagataaataatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattctaaataacaaatactctcaaattacctcagtgaataacaaatagataaataatgt 320
Query: 121 aatgacttacccatggctagtacagaaacagcatatggaattgtagtgtgctattaggtt 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgactcacccatggctagtacagaaacagcatatggaattgtagtgtgctattaggtt 380
Query: 181 tcaatataagtgactgacgttcctccacaatccatttgggcagaaacagatgggccatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaatataagtgactgacgttcctccacaatccatttgggcagaaacagatgggccatct 440
Query: 241 gttttcaagtttctcatctctttatagctcagacatctatgtgatagccagaggagaaaa 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttttcaactttctcatctctttatagctcagacatctatgtgatagccagaggagaaaa 500
Query: 301 taacaagcccttttctctcatacagcttccttcacaaggttagccttcttgtggctgtag 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacaagcccttttctctcacacagcttccttcacaaggttagccttcttgtggctgtag 560
Query: 361 agccaaccttctaacagatgaaaataggttttatgcacacatctacttcacgtttaaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccaaccttctaacagatgaaaataggttttatgcacacatctacttcacgtttaaaga 620
Query: 421 agcttattctcaaatgtaagatagaggaattctactgatttcagttccaaagcagataga 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 agcttattctcaaatgtaagatagatgaattctactgatttcagttccaaagcagataga 680
Query: 481 gagcaatgaggagaatctcctgtcatccattcctttgaatgcattgcttcagtccactaa 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagcaataaggagaatctcctgtcatccattcctttgaatgcattgcttcagtccactaa 740
Query: 541 aaatac 546
||||||
Sbjct: 741 aaatac 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
