BAC Information

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BAC

Clone NameMSMg01-337I15
Chromosome5 (Build37)
Map Location 85,545,646 - 85,546,042
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha5, LOC100039489
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337I15.T7 (MSMg01no337_i15.b1)MSMg01-337I15.TJ (MSMg01no337_i15.g1)
ACCAG452291AG452292
length770776
length of high quality
(start - end)		609 (40 - 648)511 (70 - 580)
definitionCHROMAT_FILE: MSMg01no337_i15.b1 PHD_FILE: MSMg01no337_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:57 2005CHROMAT_FILE: MSMg01no337_i15.g1 PHD_FILE: MSMg01no337_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTTTATCCCCATTAGAATGTTGACTAGTATTACATAGGTATTGATTTTAA
AAAATCATATTGTAATTTCATCATTGAAGCATCTCTGTCATATTTATAGG
ACACTATATCACAGCTAGTAACCTGGTCTTCAGTCTCTGTTCTCTCTTAA
ACAATTTTTAACTGATTTTTGAGGATAGAAATTGCATTTATCTCTGTAAC
TCCTTCCATGGGTTTTTTGTTCCCAATTCTAAGAAGGAAAAAAGTACCTA
CACTTTGGTCTTCTTTCTTCTTGAGTTTCATGTGTTTTGCAAATTGTATC
TTGGGTATTCTAAATTTCCAGGCTAATATCCACTTATCAGTGAGTGCATG
TCATGTGTGTTCATTTGTGACTGGGTTAGCCTGGCAAATACAGAAGTGTA
TGCTCATAGTCATCCATTGGATGGAGCACAAGGTCCCCAATGAAGGAGCC
AGAGAAATACCCAGGGAGCTGAAGGGGACTGAAGCCCCATAGAAGGAACA
TCAATATGAACTAACCAGTACCCCACAGAACTCCTTGGAACAATACTACC
AATCAAAGAAAACACATGGTGGAACTTGTGGCTCTAGCTATATATATAGC
AGAGGATGGCCTAGTCGATCAGCAATGGGAGGAGAGATCCTGTGATGCTC
TATGCCATATAGTATAGGGGAATGCCCAGAACAGNAATGGGTATGGGTGG
GTTTGGGAAAACTNANNACN

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTC
TGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTGGNCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACAATTCACAAAGGAACTCACACATATGTACTCCCTGATAAGTGGAAAAT
AGCCCCAAACCTTAGATACCCCAGAATTAAGAAAACATTTTCTTAAACCT
GGAAATTCCTAAAAATGAAAACGAGGGGGGAGCCCTAGGCCCCTCCTTTA
AAAGGGGGAAAAACACTCTGTGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_i15.b1 MSMg01no337_i15.b1 CHROMAT_FILE:
MSMg01no337_i15.b1 PHD_FILE: MSMg01no337_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:57 2005
         (609 letters)



>mm_chr5_85545646_85546654
          Length = 1009

 Score =  737 bits (381), Expect = 0.0
 Identities = 393/397 (98%), Gaps = 1/397 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattttatccccattagaatgttgactagtattacataggtattgattttaaaaa 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gaattcgttttatccccattagaatgttgactagtattacataggtattgattttaaaaa 338

                                                                       
Query: 65  atcatattgtaatttcatcattgaagcatctctgtcatatttataggacactatatcaca 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atcataatgtaatttcatcattgaagcatctctgtcatatttataggacactatatcaca 278

                                                                       
Query: 125 gctagtaacctggtcttcagtctctgttctctcttaaacaatttttaactgatttttgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gctagtaacctggtcttcagtctctgttctctcttaaacaatttttaactgatttttgag 218

                                                                       
Query: 185 gatagaaattgcatttatctctgtaactccttccatgggtttttt-gttcccaattctaa 243
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 217 gatagaaattgcatttatctctgtaactccttccatggttttttttgttcccaattctaa 158

                                                                       
Query: 244 gaaggaaaaaagtacctacactttggtcttctttcttcttgagtttcatgtgttttgcaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gaaggaaaaaagtacctacactttggtcttctttcttcttgagtttcatgtgttttgcaa 98

                                                                       
Query: 304 attgtatcttgggtattctaaatttccaggctaatatccacttatcagtgagtgcatgtc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  attgtatcttgggtattctaaatttccaggctaatatccacttatcagtgagtgcatgtc 38

                                                
Query: 364 atgtgtgttcatttgtgactgggttagcctggcaaat 400
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  atgtgtgttcatttgtgactgggttagcctggcaaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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