Query= MSMg01no337_j23.b1 MSMg01no337_j23.b1 CHROMAT_FILE:
MSMg01no337_j23.b1 PHD_FILE: MSMg01no337_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:03 2005
(550 letters)
>mm_chr5_121513055_121514004
Length = 950
Score = 768 bits (397), Expect = 0.0
Identities = 455/499 (91%), Gaps = 40/499 (8%)
Strand = Plus / Plus
Query: 1 ggcctggagccacgggccagtcagtcctttgagactgaaaaggacatcagaactcattcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcctggagccacaggccagtcagtcctttgagactgaaaaggacatcagaactcattcc 260
Query: 61 gctaaccacactttgtgctttctgccacactacagtccagaactggcatcacctctctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctaaccacactttgtgctttctgccacactacagtccagaactggcatcacctctctag 320
Query: 121 gcctggcaaacattctcccagctctactgaatggtctccagatagagatacacgctaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctggcaaacattctcccagctctactgaatggtctccagatagagatacacgctaaca 380
Query: 181 tctaggacagcctcagagctgagcacacccacctcccacaggctaagccacacccaccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaggacagcctcagagctgagcacacccacctcccacaggctaagccacacccaccta 440
Query: 241 tccccacaaatacacacacacactctaaaatgtgctcacctcccaagggtaagccacacc 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcccacaaatacacacacacactctaaaatgtgctcacctcccaagggtaagccacacc 500
Query: 301 tacctcttcacacacacacacacaga-------------------g-------------- 327
|||||||||||||||||||||||| | |
Sbjct: 501 tacctcttcacacacacacacacacacacacacacacacacacacgcacacacatgcaca 560
Query: 328 -----acatacacacacacacacacacacacacacaaacacaaacacagactaagccatg 382
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 561 cacacacatacacacacacacacacacacacacacacacaca--cacagactaagccatg 618
Query: 383 cccacctcccaaggctaagctacacccagttcccccaggctaagtcatacctacctcttc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cccacctcccaaggctaagctacacccagttcccccaggctaagtcatacctacctcttc 678
Query: 443 ctacacacacacacacaca 461
|||||||||||||||||||
Sbjct: 679 ctacacacacacacacaca 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 198
Number of extensions: 51
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_j23.g1 MSMg01no337_j23.g1 CHROMAT_FILE:
MSMg01no337_j23.g1 PHD_FILE: MSMg01no337_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:03 2005
(488 letters)
>mm_chr5_121708321_121709208
Length = 888
Score = 936 bits (484), Expect = 0.0
Identities = 487/488 (99%)
Strand = Plus / Minus
Query: 1 attacagactactaggtctttttttaaattaaaaaatgaaaagaacactcaaggaacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 attacagactactaggtctttttttaaattaaaaaatgaaaagaacactcaaggaacact 629
Query: 61 ttcacatccttcaacagttagctatgattctatatctagtcaaaactatgaattattaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttcacatccttcaacagttagctatgattctatatctagtcaaaactatgaattattaat 569
Query: 121 tggtaagatttaataatctgtttgtccctaagagcctctatgcactcttgtttagagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tggtaagatttaataatctgtttgtccctaagagcctctatgcactcttgtttagagaaa 509
Query: 181 cgagttgtttaatagataagggacaacttacctatataaaacatcggcgacaggcaggga 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cgagttgtttaataggtaagggacaacttacctatataaaacatcggcgacaggcaggga 449
Query: 241 gcccagctcagtctgtctctgcagcaggtgaactgtgtggacaaaggtcttcagtgaccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gcccagctcagtctgtctctgcagcaggtgaactgtgtggacaaaggtcttcagtgaccc 389
Query: 301 cctagagagaaaaggaagggatggaaaagccacccacactgaaaaccaagtaagcaggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cctagagagaaaaggaagggatggaaaagccacccacactgaaaaccaagtaagcaggca 329
Query: 361 gccagggttgattttattaaccatagagcaaggctccaagacaggcctatctgctgttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gccagggttgattttattaaccatagagcaaggctccaagacaggcctatctgctgttat 269
Query: 421 aggtcagaaactgcacaattcagcatggtcaccacaacactggctctggtaggatgggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aggtcagaaactgcacaattcagcatggtcaccacaacactggctctggtaggatgggag 209
Query: 481 taggccca 488
||||||||
Sbjct: 208 taggccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
