Query= MSMg01no338_f03.b1 MSMg01no338_f03.b1 CHROMAT_FILE:
MSMg01no338_f03.b1 PHD_FILE: MSMg01no338_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:55 2005
(547 letters)
>mm_chr5_74838927_74839873
Length = 947
Score = 973 bits (503), Expect = 0.0
Identities = 531/543 (97%), Gaps = 6/543 (1%)
Strand = Plus / Plus
Query: 8 ggaattcaggtga---tttcctaatgaactgcccggcctcttgtatgaagaaataccaac 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattcaggtgagggt---ctaatgaactgcccggcctcttgtatgaagaaataccaac 264
Query: 65 aagcctgatcttgaaggtctcttgcaagtagccactgcactctgatgagcctggtaacag 124
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 aagcctgatcttgaaggtctcttgcaagtagccactgtactctgatgagcctggtaacag 324
Query: 125 ctggtatgctcagaagacaatattccacagcaatatgctgtaccattaacaaacattaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggtatgctcagaagacaatattccacagcaatatgctgtaccattaacaaacattaat 384
Query: 185 tttcctataaaagtataacccagggtaaatgagtttttaatgtttggaaaaagtatgtca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcctataaaagtataacccagggtaaatgagtttttaatgtttggaaaaagtatgtca 444
Query: 245 aaggtcatgggacaactgtgattatcccgaggatttacataggaagactgcattacacag 304
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 445 aaggtcatgggacaactgtgattatcccgaggatttacataggaagattgcattacacag 504
Query: 305 cattagcttcctagtcacttttactgtgctatggcatagccaatgagaactacttatatt 364
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catcagcttcctagtcacttttactgtgctatggcatagccaatgagaactacttatatt 564
Query: 365 tgtctataaaatttatgcatatgcattaccttctaaaattaaatttctaaatacttttaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtctataaaatttatgcatatgcattaccttctaaaattaaatttctaaatacttttaa 624
Query: 425 gaaaaaaaggactaaaaagcataaaaatgttttcctccttaaaagcttattattactatt 484
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 625 gaaaaaaaggactaaaaagcataaaaatgttttcctctttaaaaacttattattactatt 684
Query: 485 actattattattaatgtatgtgtgaatgagggagatggggaggaagaaggaggaaaggtg 544
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actattattattaatgtgtgtgtgaatgagggagatggggaggaagaaggaggaaaggtg 744
Query: 545 tgt 547
|||
Sbjct: 745 tgt 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_f03.g1 MSMg01no338_f03.g1 CHROMAT_FILE:
MSMg01no338_f03.g1 PHD_FILE: MSMg01no338_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:55 2005
(495 letters)
>mm_chr5_75009010_75009903
Length = 894
Score = 656 bits (339), Expect = 0.0
Identities = 364/375 (97%), Gaps = 7/375 (1%)
Strand = Plus / Minus
Query: 1 aagataggctagcaaaggaagagcatgcaagcactgactcggtaagtcagggctgtgcat 60
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 371 aagataggctagcaaaggaagagcatgcaagcactgactc-gtaagttagggctgtgcat 313
Query: 61 gaagctcaggcttcctctgttgggccattcagttgcatttcctagatgggcatggaatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gaagctcaggcttcctctgttgggccattcagttgcatttcctagatgggcatggaatga 253
Query: 121 acagttccctgagctagccgtccattgcgagatttatcacttt---aaaaaaaaaaaaga 177
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 252 acagttccccgagctagccgtccattgcgagatttatcactttaaaaaaaaaaaaaaaga 193
Query: 178 tttatttctttactgtaagtacactgtagctgtcttcagacacaccataagagggcgtca 237
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tttatttctttaatgtaagtacactgtagctgtcttcagacacaccataagagggcgtca 133
Query: 238 gatctcattacggatggttgtgagccaccatgtggttgctggaaattgaactcaggacct 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 132 gatctcattacggatggttgtgagccaccatgtggttgctggaaattgaactcagggcct 73
Query: 298 tcggaagagcagtcagtgctcttaacctcggagccagctctccagcccagatttatcaca 357
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 72 tcggaagagcagtcagtgctcttaacctcggagccagctctc---cccagatttatcaca 16
Query: 358 ttcttactccatccc 372
|||||||||||||||
Sbjct: 15 ttcttactccatccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 894
Length adjustment: 10
Effective length of query: 485
Effective length of database: 884
Effective search space: 428740
Effective search space used: 428740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
