BAC Information

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BAC

Clone NameMSMg01-338M02
Chromosome5 (Build37)
Map Location 19,397,522 - 19,398,099
singlet/doubletsinglet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338M02.T7 (MSMg01no338_m02.b1)MSMg01-338M02.TJ (MSMg01no338_m02.g1)
ACCAG453208AG453209
length748727
length of high quality
(start - end)
273 (42 - 314)579 (70 - 648)
definitionCHROMAT_FILE: MSMg01no338_m02.b1 PHD_FILE: MSMg01no338_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:27 2005CHROMAT_FILE: MSMg01no338_m02.g1 PHD_FILE: MSMg01no338_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGGAGGATCCGCGGAATTC
TTTGTTTTTCTCTGTACCCCATTTTTAATGGGGTTATTTGATTTTCTGGA
GTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGGTCCTTTCCCAATCTGTTGGTGGCTTTTTTGTC
TCATTGACAGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGACATC
CCATTTGTTAATTCTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCA
GGAATTTTTCCTCTTTGTATCCATATCTTCTAGGCTTACCCCTACTTTCT
CCACTATAAGTTACAGTGTCTCTGGTTTTATGTGCAGTTCCTTAATCCAC
TTAGATTTCACCTTAGTACAAGGAGATAGGAATTGGATCAATGAGTATTC
TTCCATATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTG
TCTTTTTTCCACAGTATGGTTTTTGCTCCCTTGCCAAATATCCAGTGATC
ACAGGTGTGCGGGATCATTTCTGGTTCTTCAATTCCATTCCATTGGCCCA
CTTGTTCTGCTTATATACCACTAATCATGCTCTTTCTTACCACAATTGCT
CTTGTACTTCCGCCTTCCCGTCCCGGATTGTTGCATTCTACCACCAAGTT
CTATTTATTCTCTTGAGTTGCGTTTTTTTGTCTATCCTACTTCCTTTG
ACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTTGACCCACCAATATGCAGGTCTAAGCC
ACCATCATAGTTATTTAGAGTGATGGATCTCTTTGTTTCTACCTTTCTTC
TCAGCCAGATAGGTGGGTTCATTAAACTACAAGTCTGACGGTGTTAGTCC
TTTTAACCCCCTAAGGAGGTTCCTGACTTAATTAGAATAAACCAATTCAT
CACAACATGACTTATGAAACCCTTCTCAACTTGAGAGCTACTTCCAACCC
ACACTCCTCAGAGCAAGACTCTGCCTTCTTCACAGGACTCTAGACACCAA
GCTTGTAGAGCTGCCCTCTAAAACAGCAGGCAGACTCCTCCCACTTCCCT
CTAAAGCAGCAGGCAGACTCCTCCTACTTCCCTCTAAAACATTAGGCAGA
CTCCTCCCACTTCCCTCTAAAACAGCAGGCCGACTCCTCTCACTTCCCTT
TAAGACAGTAGGCAGTTCCACCCGAAATGCATTTCCCCCAAGCATCTATG
TGGCTAACATTTCAGAATTCTTTCCACACTGAGCATGTTTCTGGATGGGC
CATCTAGCCTTCATCCTGCCTTTAGTTCTCACTTCTAGCCACATCCGTCC
CCAGCACACATATACCTAAGAGTTCTATATTTGCCTTTTTTTTCTTTAGG
AGTTATTAGCATGCCACATGCTGCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_m02.g1 MSMg01no338_m02.g1 CHROMAT_FILE:
MSMg01no338_m02.g1 PHD_FILE: MSMg01no338_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:27 2005
         (579 letters)



>mm_chr5_19397322_19398299
          Length = 978

 Score = 1081 bits (559), Expect = 0.0
 Identities = 574/579 (99%), Gaps = 1/579 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttgacccaccaatatgcaggtctaagccaccatcatagttatttagagtgatggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cttttgacccaccaatatgcaggtctaagccaccatcatagttatttagagtgatggatc 719

                                                                       
Query: 61  tctttgtttctacctttcttctcagccagataggtgggttcattaaactacaagtctgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tctttgtttctacctttcttctcagccagataggtgggttcattaaactacaagtctgac 659

                                                                       
Query: 121 ggtgttagtccttttaaccccctaaggaggttcctgacttaattagaataaaccaattca 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ggtattagtccttttaaccccctaaggaggttcctgacttaattagaataaaccaattca 599

                                                                       
Query: 181 tcacaacatgacttatgaaacccttctcaacttgagagctacttccaacccacactcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tcacaacatgacttatgaaacccttctcaacttgagagctacttccaacccacactcctc 539

                                                                       
Query: 241 agagcaagactctgccttcttcacaggactctagacaccaagcttgtagagctgccctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agagcaagactctgccttcttcacaggactctagacaccaagcttgtagagctgccctct 479

                                                                       
Query: 301 aaaacagcaggcagactcctcccacttccctctaaagcagcaggcagactcctcctactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaaacagcaggcagactcctcccacttccctctaaagcagcaggcagactcctcctactt 419

                                                                       
Query: 361 ccctctaaaacattaggcagactcctcccacttccctctaaaacagcaggccgactcctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccctctaaaacattaggcagactcctcccacttccctctaaaacagcaggccgactcctc 359

                                                                       
Query: 421 tcacttccctttaagacagtaggcagttccacccgaaatgcatttcccccaagcatctat 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcacttccctttaaaacagtaggcagttccacccgaaatgcatttcccccaagcatctat 299

                                                                       
Query: 481 gtggctaacatttcagaattctttccacactgagcatgtttctggatgggccatctagcc 540
           ||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 298 gtggctaacatttcaaaattctttccacactgagcatgtttct-gatggcccatctagcc 240

                                                  
Query: 541 ttcatcctgcctttagttctcacttctagccacatccgt 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ttcatcctgcctttagttctcacttctagccacatccgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 978
Length adjustment: 10
Effective length of query: 569
Effective length of database: 968
Effective search space:   550792
Effective search space used:   550792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)