BAC Information

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BAC

Clone NameMSMg01-339F13
Chromosome5 (Build37)
Map Location 142,331,002 - 142,493,573
singlet/doubletdoublet
Overlap geneSdk1
Upstream geneCard11, LOC623466
Downstream geneLOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339F13.T7 (MSMg01no339_f13.b1)MSMg01-339F13.TJ (MSMg01no339_f13.g1)
ACCAG453654AG453655
length707732
length of high quality
(start - end)		479 (75 - 553)559 (56 - 614)
definitionCHROMAT_FILE: MSMg01no339_f13.b1 PHD_FILE: MSMg01no339_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:09 2005CHROMAT_FILE: MSMg01no339_f13.g1 PHD_FILE: MSMg01no339_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,493,149 - 142,493,573)(142,331,002 - 142,331,560)
sequence
TATTTATATTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGCATTTACTGAAATTACAGCTCACTGTCCAACGTGA
TTTTTATATTCTAACTTGCCCGGTTGTATTATTAAGATAACACAACCCCA
TCTGTCACAGAGAAGCCATGAAATTAGAGGTATTAACAGGATAAAATGTC
ATCATTTCTTCTATCTTTATCCTCAAGACCAAGGCCAGTTCTCCTGGTGG
GAGCTGGGGTATACATAATTCCTACTGTTGGTGTTTAGTTGTCTGTCTGT
TTTTGAGACAGTCTCTCATTTATTCTAGGCTAGCCTCGAACTTACTATGT
ATCCAAGGATGACCTTGACTGTCCGGTCCTCCTGCTTCTGAAGGCTTGCG
CCACACACCTGACTTTGCTATGCTGGGGTTGAACGCAGAGCTTTGTGCAC
AGTAGGCAATCATTCTACTGCCTGAGTCACACCCTCAGGCTATTCGGTGC
TATTCTTCTAGGAGCTAAAGACCGCTTAGTCAGAATTTCAGGGGACAAAA
GTGTCTGAGCCCAGGCTCCTGCATGCGTCTGTGTTCTGTGAGGATCGTAC
TTCTGTATTCTCTTCTGATAGGCAGGATGTGAGCTCTATGTAGTTCTGGG
GCCACTCTGCCCAGAGACAACTCCTCTCATTCTGACTAATTTCCAGGTAA
GAGCTCA

TGGAGGACGCCTGTTTTCAAACATGGGGTGAACTATAGAATTTTCCGCGG
AATGCTGCTTTCAAGAAGTGGAGGTGTACTTCAGTGACAGAATACTTGTC
TACAGTCCTCTAGTGAGGGACTAGAGGTGTGGCTCAGTGGTAGAGCCCCT
GCCTAGAATCCTCCAGGGAGGGGCTAGAGTGTGGCTCAGTGGTAGAGCCC
CTGCCTAGAATCCCCCAGTGAGGGGCTGAGGGTGTGGCTCAGTGGTAGAG
CCCCTGCCTAGAATCCCCCAGTGAGGGCCTGGGGGTGTGGCTCAGTGGTA
GAGCATTTGTATGCACAATAGAGCACTTCTGCCTTCCCAATCAAAGCCTA
CTTTTAAACTTTAAAAAATGGCAACCAAGGCCTATAACCCTTGTTTTTCT
TTATACCTGAAGTCCCAGCTCATGATCAGCTAAAAGCTATTCAGAATTCC
AGAGGCCTGTGAGTGATTATTTCATTCTGAGCATTTTGGGAACTGTGCAT
GTCCGTGTCCTTGAGGCTTGGAGTTCACCTGAGGGCCTCTTACATCTGAT
TTTGTGCATAGCACTTGAAAGGCTTTCCTGGCATTTGTACAGGATCCACT
AAAATCTGCTTATTGTTTTGTTGTTTGTTGAGGGTTTTTTGGGCTGGTGG
ACTTGGCATTTGTCTCTTTTTTACTTCCCCGGGAGGTTTAACCCCCAGGA
GATACTAACTCCCTTTCTTATATGAACAGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_f13.b1 MSMg01no339_f13.b1 CHROMAT_FILE:
MSMg01no339_f13.b1 PHD_FILE: MSMg01no339_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:09 2005
         (479 letters)



>mm_chr5_142493149_142494027
          Length = 879

 Score =  783 bits (405), Expect = 0.0
 Identities = 420/425 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattacagctcactgtccaacgtgatttttatattctaacttgcccggttgtattatta 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 425 aaattacagctcactgtccaacgtgatttttatattctaacttgcctggttgtattatta 366

                                                                       
Query: 61  agataacacaaccccatctgtcacagagaagccatgaaattagaggtattaacaggataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agataacacaaccccatctgtcacagagaagccatgaaattagaggtattaacaggataa 306

                                                                       
Query: 121 aatgtcatcatttcttctatctttatcctcaagaccaaggccagttctcctggtgggagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aatgtcatcatttcttctatctttatcctcaagaccaaggccagttctcctggtgggagc 246

                                                                       
Query: 181 tggggtatacataattcctactgttggtgtttagttgtctgtctgtttttgagacagtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tggggtatacataattcctactgttggtgtttagttgtctgtctgtttttgagacagtct 186

                                                                       
Query: 241 ctcatttattctaggctagcctcgaacttactatgtatccaaggatgaccttgactgtcc 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 185 ctcatttagcctaggctagcctcgaacttactatgtatccaaggatgaccttgactgtct 126

                                                                       
Query: 301 ggtcctcctgcttctgaaggcttgcgccacacacctgactttgctatgctggggttgaac 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 125 ggtcctcctgcttctgaaggcttgcaccacacacctgactttgctatgctggggttgaac 66

                                                                       
Query: 361 gcagagctttgtgcacagtaggcaatcattctactgcctgagtcacaccctcaggctatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  gcagagctttgtgcacagtaggcaatcattctactgcctgagtcacaccctcaggctatt 6

                
Query: 421 cggtg 425
           |||||
Sbjct: 5   cggtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no339_f13.g1 MSMg01no339_f13.g1 CHROMAT_FILE:
MSMg01no339_f13.g1 PHD_FILE: MSMg01no339_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:09 2005
         (559 letters)



>mm_chr5_142330802_142331760
          Length = 959

 Score = 1042 bits (539), Expect = 0.0
 Identities = 554/559 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctttcaagaagtggaggtgtacttcagtgacagaatacttgtctacagtcctctagtg 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctttcaagaagtggaggtgtacgtcagtgacagaatacttgtctacagtcctctagtg 260

                                                                       
Query: 61  agggactagaggtgtggctcagtggtagagcccctgcctagaatcctccagggaggggct 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 agggactagaggtgtggctcagtggtagagcccctgcctagaatcccccagggaggggct 320

                                                                       
Query: 121 agagtgtggctcagtggtagagcccctgcctagaatcccccagtgaggggctgagggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 agagtgtggctcagtggtagagcccctgcctagaatcccccagtgaggggctgggggtgt 380

                                                                       
Query: 181 ggctcagtggtagagcccctgcctagaatcccccagtgagggcctgggggtgtggctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctcagtggtagagcccctgcctagaatcccccagtgagggcctgggggtgtggctcag 440

                                                                       
Query: 241 tggtagagcatttgtatgcacaatagagcacttctgccttcccaatcaaagcctactttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtagagcatttgtatgcacaatagagcacttctgccttcccaatcaaagcctactttt 500

                                                                       
Query: 301 aaactttaaaaaatggcaaccaaggcctataacccttgtttttctttatacctgaagtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaactttaaaaaatggcaaccaaggcctataacccttgtttttctttatacctgaagtcc 560

                                                                       
Query: 361 cagctcatgatcagctaaaagctattcagaattccagaggcctgtgagtgattatttcat 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagctcatgataagctaaaagctattcagaattccagaggcctgtgagtgattatttcat 620

                                                                       
Query: 421 tctgagcattttgggaactgtgcatgtccgtgtccttgaggcttggagttcacctgaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgagcattttgggaactgtgcatgtccgtgtccttgaggcttggagttcacctgaggg 680

                                                                       
Query: 481 cctcttacatctgattttgtgcatagcacttgaaaggctttcctggcatttgtacaggat 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 cctcttacatctgattttgtgcatagcacttgaaaggcattcctggcatttgtacaggat 740

                              
Query: 541 ccactaaaatctgcttatt 559
           |||||||||||||||||||
Sbjct: 741 ccactaaaatctgcttatt 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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