Query= MSMg01no339_i11.b1 MSMg01no339_i11.b1 CHROMAT_FILE:
MSMg01no339_i11.b1 PHD_FILE: MSMg01no339_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:23 2005
(637 letters)
>mm_chr5_106004545_106005583
Length = 1039
Score = 1137 bits (588), Expect = 0.0
Identities = 620/632 (98%), Gaps = 4/632 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaacagtccatcgctgttcatgccagtcaagcgtcagttgatctcagaagtct 64
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaacagtccatcgctgtttatgccagtcaagcgtcagttgatctcagaagtct 264
Query: 65 gtaactaagaagatactaaagtaaaacattacctaggtttagtgaacatgaaaacattcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaactaagaagatactaaagtaaaacattacctaggtttagtgaacatgaaaacattcc 324
Query: 125 atatgttcctattaatagctggcttcctcatcccggacaccccatggagactctgcatct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatgttcctattaatagctggcttcctcatcccggacaccccatggagactctgcatct 384
Query: 185 ccccaccgctgatgaactcagtggagctggcttggcttaaagcgagagaac---gctgtc 241
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 ccccaccgatgatgaactcagtggagctggcttggcttaaagcgagagaagaatgctgtc 444
Query: 242 ttccttcttggctccaccagcttgtcactcaaggctgctccctacctgaccatctgcctg 301
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgccttcttggctccaccagcttgtcactcaaggctgctccctacctgaccatctgcctg 504
Query: 302 gtgatctggacggctgcctgcctgcaagcaggtcagctgatacctctctatcggccacat 361
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 505 gtgatctgggcggctgcctgcctgcaagcaggtcagctgatgcctctctatcggccacat 564
Query: 362 ctggctgctgaaagggcctgcagctgggtgaactccaggagagatagcagttcaccctta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctggctgctgaaagggcctgcagctgggtgaactccaggagagatagcagttcaccctta 624
Query: 422 atcaagcttgagtctctctgtctgctctgttctagccccctatccacccgctgataccca 481
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 atcaagcttgagtctctctgtctgctctgttctagccccc-atccacccgctgataccca 683
Query: 482 ttgccttgggagccccagagaagcactcacagtgaggctcattgccacctccctattgtc 541
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 684 ttgccttgggagccccagagaagcactcacagtgaggctcattgctacctccctattgtc 743
Query: 542 catgctgtaactagtcgaggcctcagaaataaatatccacttgacacgaaagcccacccg 601
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 744 catgctgtaactagtcgaggcctcagaaataaatattcacttgacacgaaagcccacccg 803
Query: 602 ttcacatagtctttgcacttctgacctcatac 633
||||||||||||||||||||||||||||||||
Sbjct: 804 ttcacatagtctttgcacttctgacctcatac 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1039
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1029
Effective search space: 645183
Effective search space used: 645183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_i11.g1 MSMg01no339_i11.g1 CHROMAT_FILE:
MSMg01no339_i11.g1 PHD_FILE: MSMg01no339_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:23 2005
(494 letters)
>mm_chr5_106041496_106042389
Length = 894
Score = 895 bits (463), Expect = 0.0
Identities = 486/494 (98%)
Strand = Plus / Minus
Query: 1 aggaaggaaacaattcgttacaatgataaaaactagctcccatggtaaagagcaaacgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aggaaggaaacaattcgttacaatgataaaaactagctcccatggtaaagagcaaacgag 635
Query: 61 cctatttcctgcagcccagagaaccttggtaatggcctaagaacaaaagatgtgcatgat 120
||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |||
Sbjct: 634 cctatttcctgcagcccagagaaccttagtaacggcctaagaacaaaagatacgcaagat 575
Query: 121 ttctaaaagtaagaaaggatggatcccaaagatatgttacaaaaatgactttatttattt 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttctaaaagtaagaaaggatgggtcccaaagatatgttacaaaaatgactttatttattt 515
Query: 181 ttgttcctatacaccacacagcgagataacactaagacgtttcctttcatgaacatgtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ttgttcctatacaccacacagcgagataacactaagacgtttcctttcatgaacatgtat 455
Query: 241 tctgacaaatcaacgatcagtcctttttctcggcagtccaagaagtttgccagcacttga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tctgacaaatcaacgatcagtcctttttctcggcagtccaagaagtttgccagcacttga 395
Query: 301 caatctgaatgcacatgaacatagtaaacaaatgcaaaccaaacaccagcaaacacataa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 394 caatctgaatgcacatgaacatagtaaacaaatgcaaaccaaacaccagcaagcacataa 335
Query: 361 ggcatggggtgtcaaccccaaagagcagtgtggcaggggaccgaagacacaaacgaatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggcatggggtgtcaaccccaaagagcagtgtggcaggggaccgaagacacaaacgaatct 275
Query: 421 aactataaaccacgcaggccaggtgtgcagtanacacctgtaatccagtgtccaggaagc 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 274 aactataaaccacgcaggccaggtgtgcagtaaacacctgtaatccagtgtccaggaagc 215
Query: 481 cggggcaagaggct 494
||||||||||||||
Sbjct: 214 cggggcaagaggct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
