Query= MSMg01no339_i22.b1 MSMg01no339_i22.b1 CHROMAT_FILE:
MSMg01no339_i22.b1 PHD_FILE: MSMg01no339_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:25 2005
(478 letters)
>mm_chr5_93063530_93064410
Length = 881
Score = 774 bits (400), Expect = 0.0
Identities = 459/480 (95%), Gaps = 9/480 (1%)
Strand = Plus / Plus
Query: 5 gaattcagaatagcatgtcttaggaaacatggctggcacagtcagatcatggagtagttt 64
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcagaatagcatgttttaggaaacatggctggcacagtcagatcatggagtatttt 264
Query: 65 atctaaccacgaaggtctagcttcttaggaattagagattgattttgatacctttaggtt 124
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 265 atctaaccacgaaggtctagcttcttaggaactagtgattgattttgatacctttaggtt 324
Query: 125 tttcggggtttctaagtaacaggaagacag---taacaat-gtgtaacaatgataaacag 180
|||||||||||||||||||||||||||||| || | | ||||||||||||||| |||
Sbjct: 325 tttcggggtttctaagtaacaggaagacagatttatc-ctcgtgtaacaatgataatcag 383
Query: 181 tgccaggcccttctcctttc-ttctgtcttctacctaacctttccagacccagcagggca 239
|||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 384 tgccaggcccttctcc-ttctttctgtcttctacccaacctttccagacccagcagggca 442
Query: 240 tcagatattagcactatcattttattaacatttaagagactgtattgcacctaaagtgta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcagatattagcactatcattttattaacatttaagagactgtattgcacctaaagtgta 502
Query: 300 gataacttttgacggtagggctgatgctcacagaggcatgtttactcaggtgagtaaagc 359
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 503 gatcacttttgacggtagggctgatgctcacagaggcatgtttactcaggtgagtaaaac 562
Query: 360 tagcaaggacagattatatctactgctcctatgactgtgttaccttggtaactgcagaga 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagcaaggatagattatatctactgctcctatgactgtgttaccttggtaactgcagaga 622
Query: 420 -anatatcttgtgtaccaaccactgaatggatgcatcacctgtcaattaaaaagtctatg 478
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 623 ga-atatcttgtgtaccaaccacggaatggatgcatcacctgtcaattaaaaagtctatg 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 881
Length adjustment: 10
Effective length of query: 468
Effective length of database: 871
Effective search space: 407628
Effective search space used: 407628
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_i22.g1 MSMg01no339_i22.g1 CHROMAT_FILE:
MSMg01no339_i22.g1 PHD_FILE: MSMg01no339_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:25 2005
(434 letters)
>mm_chr5_93231675_93232509
Length = 835
Score = 795 bits (411), Expect = 0.0
Identities = 426/431 (98%), Gaps = 1/431 (0%)
Strand = Plus / Minus
Query: 5 tgcctgcctctctaagcccagtatcagcagagtagatcagctccgtggcgccagccagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgcctgcctctctaagcccagtatcagcagagtagatcagctccgtggcgccagccagca 443
Query: 65 gtgcggagagaggctgtcaagcaattagcttgatgataatttgctataataaatgctgct 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtgtggagagaggctgtcaagcaattagcttgatgataatttgctataataaatgctgct 383
Query: 125 tcaaatcattgaacctgatagggaagaacatctcccttccaccttcctaatgcttacctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcaaatcattgaacctgatagggaagaacatctcccttccaccttcctaatgcttacctt 323
Query: 185 gttcagtggaggaaaggcagctagcatcacgtcaaagaaaccaatgcaccttaaaaacca 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 322 gttcagtggaggaaaggcagctagaatcacgtcaaagaaaccaatgcaccttaaaaacca 263
Query: 245 aaggttcacaagtctaacaaaaatctccatggaaactcttggggaagggc-aggcacaca 303
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 262 aacgttcacaagtctaacaaaaatctccatggaaactcttggggaagggcaaggcacaca 203
Query: 304 ctggctgttcctccagaggaccagggtttgattccacaaatggcaactcaccgccttcta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctggctgttcctccagaggaccagggtttgattccacaaatggcaactcaccgccttcta 143
Query: 364 tagcatcagttccagatgatccagtgccttctggcaccaagcatatatgtgggcaaaaca 423
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 142 tagcatcagttccagatgatccagtgccttttggcaccaagcatatatgtgggcaaaaca 83
Query: 424 tcctatgcata 434
|||||||||||
Sbjct: 82 tcctatgcata 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 835
Length adjustment: 9
Effective length of query: 425
Effective length of database: 826
Effective search space: 351050
Effective search space used: 351050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
