BAC Information

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BAC

Clone NameMSMg01-341D07
Chromosome5 (Build37)
Map Location 152,232,332 - 152,232,821
singlet/doubletsinglet
Overlap geneLOC100042166
Upstream geneFry, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175
Downstream geneEG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341D07.T7 (MSMg01no341_d07.b1)MSMg01-341D07.TJ (MSMg01no341_d07.g1)
ACCAG455059AG455060
length739744
length of high quality
(start - end)		494 (48 - 541)430 (73 - 502)
definitionCHROMAT_FILE: MSMg01no341_d07.b1 PHD_FILE: MSMg01no341_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:23 2005CHROMAT_FILE: MSMg01no341_d07.g1 PHD_FILE: MSMg01no341_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGTGCCAGTTCTGGTTGTACAATCAATATTCAGTCTAGGAAT
GTCTTAAGGTCTCTCCAGGTTGATTTCTCTTTCTGTTTCTAAGAATGAAG
GAGTGAGGCTTATTTAAGGATGGAAAATTAGATGCTTTCAGAAGTTTTGG
GTGTAACTCACTAGGAGGTAGGTGCTCAGGGGAGCCTAGAGGCCACATGA
TCCACATATTTTATAAGGAGACAAGAATTGAGATTTTTCTGCAAAATTTT
ATATGTGAGCAGCTTACTTGAAATATTTAAAAGAAAACACCACCAATGCC
AAATAAACTATGTTTACAGGTGGAGTTTGTCCTGTGGATGCCAGCAGCTT
CTCAGTTTGCTGAGAAATAAAGAGCGAGGTTGATTTCAGAAGAAATGATC
TTCACGATGCTAAGAACACAAGGCGGGATTTCAAAGGAAGGAACTTAAAG
GCCTCAGCTTCATATGACTGACCTCAGCTTCTCGTGACCTCACCTGGCTG
ACCTCAGCTTCTCGCGACCTCGCCTGGCTGACCTCAGCTTCTCGTGACCT
CACCTGGCTGACCTCATCTTCTTGTGACCTCACATGAACAAACTTGGTTC
TAAAGAGCGTTGCGAGAACCGTGTAACCCCTTATCCCCCTATATTCCGAT
GTTTTATAAGGCGCCTCCCCTCGCCCCTGGTTAATATTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCACTTCTGATACCAGTTTGTATTAGT
CAGGGTTTCTATTCCTGCACAAACATTATGACCAAGAAGAAAGTTGGGGA
GAAAGAGCTTCATTCACCTTAAACTCCCATGTTGCTGTTTACCACCAAAG
GAAGTCAGGACTGGAACTTAAACAGGACAGGAATGAGGAGCTGATGCAGA
GGCCATGGAGGGAAGTTCCTTACTGGCTTACATCTCATGGCTTGCTCAGG
TTGCTTTTTTATAGAACCCAAGACTACTAGCCCAGAGATGGTATCACCCA
CAAAGGGACTTTCCCCCTTGATCACTAATTTAGTAAATGCCTTACAGTTG
GATCTCATGGAGGCATTTCTTCAACTGATACTCCTTTCTATGTGATAACA
CCAACTTGTGTCAAGTTTACAAAACCAGCCAGTACACTATTTTTTTTAAG
TCTTAAAGATCTTAAAGATTTCTTTTCCTTATTTTATGCCTGGGAGTGGT
TTTATTACCTGAATGTTTGCTTGTGTACCACATGTGTGTCTCATGCCTGC
AACATCCCTGAGGAAGAAAACTANAAAGGAGTTACCCACTATTTTATTAC
AAACATGGGTGCCATGACTTGAATCAAATCCCCCCAAAAGGTTTATTTAT
TTAAAAATTCCTGCTTTTTCTTTTCCCTCCAAAAACGATTGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_d07.b1 MSMg01no341_d07.b1 CHROMAT_FILE:
MSMg01no341_d07.b1 PHD_FILE: MSMg01no341_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:23 2005
         (494 letters)



>mm_chr5_152232128_152233021
          Length = 894

 Score =  901 bits (466), Expect = 0.0
 Identities = 484/490 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtgccagttctggttgtacaatcaatattcagtctaggaatgtcttaaggtc 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtgccagttctggttgtacaatcaacattcagtctaggaatgtcttaaggtc 264

                                                                       
Query: 65  tctccaggttgatttctctttctgtttctaagaatgaaggagtgaggcttatttaaggat 124
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 265 tctccaggttgatttctctttctgtttctaagaatgaagaagtgaggcttatttaatgat 324

                                                                       
Query: 125 ggaaaattagatgctttcagaagttttgggtgtaactcactaggaggtaggtgctcaggg 184
           | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 gtaaaattagatgctttcagaagtttcgggtgtaactcactaggaggtaggtgctcaggg 384

                                                                       
Query: 185 gagcctagaggccacatgatccacatattttataaggagacaagaattgagatttttctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagcctagaggccacatgatccacatattttataaggagacaagaattgagatttttctg 444

                                                                       
Query: 245 caaaattttatatgtgagcagcttacttgaaatatttaaaagaaaacaccaccaatgcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaaattttatatgtgagcagcttacttgaaatatttaaaagaaaacaccaccaatgcca 504

                                                                       
Query: 305 aataaactatgtttacaggtggagtttgtcctgtggatgccagcagcttctcagtttgct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aataaactatgtttacaggtggagtttgtcctgtggatgccagcagcttctcagtttgct 564

                                                                       
Query: 365 gagaaataaagagcgaggttgatttcagaagaaatgatcttcacgatgctaagaacacaa 424
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagaaataaagagtgaggttgatttcagaagaaatgatcttcacgatgctaagaacacaa 624

                                                                       
Query: 425 ggcgggatttcaaaggaaggaacttaaaggcctcagcttcatatgactgacctcagcttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggcgggatttcaaaggaaggaacttaaaggcctcagcttcatatgactgacctcagcttc 684

                     
Query: 485 tcgtgacctc 494
           ||||||||||
Sbjct: 685 tcgtgacctc 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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