BAC Information

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BAC

Clone NameMSMg01-341F04
Chromosome5 (Build37)
Map Location 50,590,176 - 50,590,685
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041659, EG433885, LOC666223, Gpr125
Downstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341F04.T7 (MSMg01no341_f04.b1)MSMg01-341F04.TJ (MSMg01no341_f04.g1)
ACCAG455147AG455148
length731724
length of high quality
(start - end)
514 (47 - 560)538 (80 - 617)
definitionCHROMAT_FILE: MSMg01no341_f04.b1 PHD_FILE: MSMg01no341_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:32 2005CHROMAT_FILE: MSMg01no341_f04.g1 PHD_FILE: MSMg01no341_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGGCTTTGGCGCTTGTTTTATTTTAAGATCATGATGTGGTTGA
GAACATAATAATGCCACAATTGATAGCTTGGCATTTGAAAAAAATAGCAC
TGGCTGAAGGCTTAGACTTATCTTCAAAGCCAAATCTTTCTTCGCTTATG
GGAATCATCAAACCTAGGGTGGTTTCTCTGACAAAAAAAGCACTTAGCTA
CCTATTTGTGGCTGATATCCAAACCAAAGCCCCTGTCTCTTACATGTCCA
GAAAAGAAAGGTAGGAATTGCAGGTAGAAAACAGTATTTCAGTTGCCTTC
CCAATCAAAATGGCCAGGTTAGCGAGTGTTCCCCTTACTGTCTGAGTACC
ACTAAGGTAGAGGGAGAACACTAAACACTGGATTTTAAGGGATGAAAAGT
GAAGACATGGCTAAGAGCAACCACAAAGTTCAGATATTTGGATTCTACCT
ATGAAATCTTACCATGGTTTTGTGATATCCATGTTACAACTTTACTTTGA
TTCACTATCGTATAGTAATATATTATATGCTTGCCCTGCCAATGTGATCA
TGAACGGAAATTTCTACCATGGTGGCGGATAGAGAACCTGCATCACTTCC
TGATTTAGACACACGCCGCAAATTCAACATGGGAAGCAGCCCCCTTTAAG
CAATAACCCTTACCTTTACGGGGCTACCTCT
TCGCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAACAACAAAAACACAGAG
AGCTCACATACTCACAGAAACTAAATAATACTTTACTCATTGATAATGTG
GTCAGGAAAAAATGAAAGAGATTAAAGACTTCTAGAATTTAATGAAAATG
AAGCCACAGTATGCCCAAACTTATGGGACACAATGAAAGCAGTGCTTAGA
AGAAAATTCATAACACTGAGTACCATCATAAAGAAATTAGAAAGACCATA
CACTAGCAACTTAGCAGCACATCTGAAATCTCTAGAACAAAGAGAAGAAA
ACACACCCAAGAGGAGTACATGGCAGGACATGGTCAAACTCAGGGTTAAA
ATCAACCAATTAGAAACAGAGAACTATACAAAGAGTTAACAAAGCTAAGA
GCTGGTTCTTTAAGAAAAGCAACAAGATAAATAAACCCTTAGCCAAACTA
ACTAAAGGGCACAGAGACTGTATCCAAATTAACAAAATCAAAAATGAAAA
GGGAAACATAACAGAAACTGAAGAAATTCAGGAAATCATCAGATCCTACT
ACAAAAGCCTATATTCAACCGTATCCAAACACAACTGCATGACCTAATAC
AGCAATTTAAGATGCTGATCACGACATGGAGAGATGGCTCATAAGGTATG
AGTGCTGACTGCTCTTTCTTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_f04.b1 MSMg01no341_f04.b1 CHROMAT_FILE:
MSMg01no341_f04.b1 PHD_FILE: MSMg01no341_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:32 2005
         (514 letters)



>mm_chr5_50589972_50590885
          Length = 914

 Score =  940 bits (486), Expect = 0.0
 Identities = 504/510 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggctttggcgcttgttttattttaagatcatgatgtggttgagaacataata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggctttggcgcttgttttattttaagatcatgatgtggttgagaacataata 264

                                                                       
Query: 65  atgccacaattgatagcttggcatttgaaaaaaatagcactggctgaaggcttagactta 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgccacatttgatagcttggcatttgaaaaaaatagcactggctgaaggcttagactta 324

                                                                       
Query: 125 tcttcaaagccaaatctttcttcgcttatgggaatcatcaaacctagggtggtttctctg 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 tcttcaaagccaaatctttcttcgcttatgggaatcatcaaacctaggatggtttctctg 384

                                                                       
Query: 185 acaaaaaaagcacttagctacctatttgtggctgatatccaaaccaaagcccctgtctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaaaaaaagcacttagctacctatttgtggctgatatccaaaccaaagcccctgtctct 444

                                                                       
Query: 245 tacatgtccagaaaagaaaggtaggaattgcaggtagaaaacagtatttcagttgccttc 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 tacatgtccagaaaagaaaggtaggaattgcaggtggaaaacagtatttcagttgccttc 504

                                                                       
Query: 305 ccaatcaaaatggccaggttagcgagtgttccccttactgtctgagtaccactaaggtag 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaatcaaaatggccaggttaacgagtgttccccttactgtctgagtaccactaaggtag 564

                                                                       
Query: 365 agggagaacactaaacactggattttaagggatgaaaagtgaagacatggctaagagcaa 424
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agggagaacactaaacactgaattttaagggatgaaaagtgaagacatggctaagagcaa 624

                                                                       
Query: 425 ccacaaagttcagatatttggattctacctatgaaatcttaccatggttttgtgatatcc 484
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccacaaagttcagacatttggattctacctatgaaatcttaccatggttttgtgatatcc 684

                                         
Query: 485 atgttacaactttactttgattcactatcg 514
           ||||||||||||||||||||||||||||||
Sbjct: 685 atgttacaactttactttgattcactatcg 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)