BAC Information

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BAC

Clone NameMSMg01-341H05
Chromosome5 (Build37)
Map Location 151,671,191 - 151,671,507
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin
Downstream geneLOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341H05.T7 (MSMg01no341_h05.b1)MSMg01-341H05.TJ (MSMg01no341_h05.g1)
ACCAG455244AG455245
length780815
length of high quality
(start - end)
331 (45 - 375)192 (76 - 267)
definitionCHROMAT_FILE: MSMg01no341_h05.b1 PHD_FILE: MSMg01no341_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:42 2005CHROMAT_FILE: MSMg01no341_h05.g1 PHD_FILE: MSMg01no341_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGAAGATGCCAGCAATTTGGCTCAGAGGATATCCTTCTACAATAG
TACCCCTACTTATAGACAAAGAGACAAAGGCTCGGAGGTTAAGCGACCAT
CCCAAGATCACACAGTGAGCAAGCATCAAAGGAAATACTGGAATTCATAC
AGTTAAACCACAAAGGTCCTGCTCTTACTTGTCCGAGTCCCAAAATGGCA
GTTTTATATAGTTCAAATGAGTATATACTGAGCAGACTGGCCTCAATACT
ATAACAAGTGCAAGATGCTGGGGGCCATATTATTTATTTATTCATTTATT
TATTTATTTTCCTTACGTGTCATGCTTAACGCACCATGTGTGCTATCGCC
CAAAGCCGAATATACTTGGAATTGATAGGTCTTAACATGAAGCTTGACTC
TGCTATTTACTAACCCAGTGTATATGTGTGCGTATCTGCATGTGCGTGTG
TGTGTGTGTCGATGAAGTCCCACTCGTCATTTTTTCCCTGCGCTTTCGCC
TTTCCTTTCCTTTCTTTATCCCCTTCTTTCCCCCTTTTTTTTTTTTCCCC
CCTTTATTCTCCTTTTCTCTCCCCTTCTTTTTCTTTTTCTTCCCCCTATT
TCTTCCTCTTTCTCTCTTCTTTTTTTCCCTTTTCCCTCCTCTCCTTTTTT
TCCCTTTTTCCCCCCCCTTTTTTCCCTTCTTTTTTTTGTGTTCCCCCTTT
TCCCCCTCTCCCCCTTTTTTTTCCTTCTTT
CATTGCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGATAAGCCCAGGAATGCAAAGA
GCTTTTCTTGAGAATTCTGTTCTTATGACCACAGAATGTACCCGTGTTTA
ATTTCCCCTGTGATCTATGCATGTACAGACTCCAACTGTCCTCTAATGGC
TTGGAATTCTCCCCATGTTCCTGTAGTTTTTTTTTTTTTTTTCCTTTTCT
CTCTTTTTTTTTCCCCAAGCTAAGTTCGCTTCTCTTTATAGTAACCACTC
TCATATACTTTCGCTTGTCACCCTTACCCATGTATCTCTCCGCCCATCTA
CGTATTATCATCCTTGCCCCCTGTCTCCCTGATTACTGATCTAGGTCTAC
CTCTATCCCTTTTCTCTCCTCCTCCCTTTTTTTTTCCTTTATTTCTCTCC
CTTCCCCCCCTTATTTACCTCTTCATTTTCCCCTTTTTTTTTCCTCCTTC
TTTTCTCCTTTCCCCTTTTCTTTCTTTCCTTCTCTCTTTTTTCCCCCCCC
CCATTCCTTTCCTTCCCCCCCCTCCTTCTCCTCTTTTCTTTCCCCCTTCC
TCCCCCTTTACCTCCTCCTCTTTTTCTTCTATTTTTTTTCCCCCTTTTTT
TTTCCCCCCTCTTCCCCTCCTTTTTTTTTCTCTCTCTCCTCCCCATTTTA
TTTTTTCTTCTCCTTTTACCCCCTCTCCCTTTTCTTTTTTCGCCCCCCCT
TCTTTTTTTTTATCTTTTTTTCCTCTCCTTCTTTCCCCCTTTTTCCTTTC
CCTTTTCCTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_h05.b1 MSMg01no341_h05.b1 CHROMAT_FILE:
MSMg01no341_h05.b1 PHD_FILE: MSMg01no341_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:42 2005
         (331 letters)



>mm_chr5_151670985_151671715
          Length = 731

 Score =  516 bits (267), Expect = e-151
 Identities = 308/327 (94%), Gaps = 10/327 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgaagatgccagcaatttggctcagaggatatccttctacaatagtaccccta 64
           |||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 207 gaattcctgaagatggtagcaatttggctcagaggatagccttctacaatagtaccccta 266

                                                                       
Query: 65  cttatagacaaagagacaaaggctcggaggttaagcgaccatcccaagatcacacagtga 124
           ||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 267 cttatagaca--gagacaaaggctcggaggttaagcgactatcccaagatcacacagtga 324

                                                                       
Query: 125 gcaagcatcaaaggaaatactggaattcatacagttaaaccacaaaggtcctgctcttac 184
           ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 gcaagcagcaaaggaaaaactggaattcagacagttaaaccacaaaggtcctgctcttac 384

                                                                       
Query: 185 ttgtccgagtcccaaaatggcagttttatatagttcaaatgagtatatactgagcagact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtccgagtcccaaaatggcagttttatatagttcaaatgagtatatactgagcagact 444

                                                                       
Query: 245 ggcctcaatactataacaagtgcaagatgctgggggccatattatttatttattcattta 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||      
Sbjct: 445 ggcctcaatactataacaagtgcaagatgctgggggccatattgtttatttatt------ 498

                                      
Query: 305 tttatttattttccttacgtgtcatgc 331
             ||||||||||||||| |||||||||
Sbjct: 499 --tatttattttccttaggtgtcatgc 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)