Query= MSMg01no341_i14.b1 MSMg01no341_i14.b1 CHROMAT_FILE:
MSMg01no341_i14.b1 PHD_FILE: MSMg01no341_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:49 2005
(527 letters)
>mm_chr5_32247593_32248518
Length = 926
Score = 934 bits (483), Expect = 0.0
Identities = 513/523 (98%), Gaps = 1/523 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtatggctttgttatgcaaaacaaagcaggtttatagtgtttttcatgcttag 64
|||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 726 gaattcagtagggttttgttatgcaaaacaaagcaggtttataatgtttttcatgcttag 667
Query: 65 ggtcaggaacaagcagacaagcagatcaacatagttggtcttcaaagtcattgaaaactt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ggtcaggaacaagcagacaagcagatcaacatagttggtcttcaaagtcattgaaaactt 607
Query: 125 aacaactggcatcagttcattccgagcgactctggctagcacggatggacagattctagc 184
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 606 aacaactggcatcagttcattccgagtgactctggctagcacggatgggcagattctagc 547
Query: 185 tatacaaacagtccagagcaacaaactcagctactccactgtctcttcaagagctagttt 244
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 546 tatacaaacagtccagagcaacaaactcagctacgccactgtctcttaaagagctagttt 487
Query: 245 atccggataacttgaattcctttataggaccaatttctcaaaatcatcaggggacaaagc 304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atcaggataacttgaattcctttataggaccaatttctcaaaatcatcaggggacaaagc 427
Query: 305 tgcacagatgactccactcattgtccactgtgaaagttctcctgacagttacgaaggcct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgcacagatgactccactcattgtccactgtgaaagttctcctgacagttacgaaggcct 367
Query: 365 tctactgattatcaacaagtctttggaaaaaccatcaccattctcacccctaaaccaagc 424
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 366 tctactgattatcaacaagtctttgg-aaaaccatcaccattctcacccctaaaccaagc 308
Query: 425 aatagaataagacctaccaacagacacattcaatagccaaaaggaactcagtagtcctca 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aatagaagaagacctaccaacagacacattcaatagccaaaaggaactcagtagtcctca 248
Query: 485 ctgcttctgcctccacactggggaaagcacaaaaactgctctc 527
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctgcttctgcctccacactggggaaagcacaaaaactgctctc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 926
Length adjustment: 10
Effective length of query: 517
Effective length of database: 916
Effective search space: 473572
Effective search space used: 473572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_i14.g1 MSMg01no341_i14.g1 CHROMAT_FILE:
MSMg01no341_i14.g1 PHD_FILE: MSMg01no341_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:49 2005
(317 letters)
>mm_chr5_32086537_32087253
Length = 717
Score = 590 bits (305), Expect = e-173
Identities = 314/317 (99%)
Strand = Plus / Plus
Query: 1 tttggttttagtgcctaccgtaggccctagagcaaagttcagttcattattcagtgaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggttttagtgcctaccgtaggccctagagcaaagttcagttcattattcagtgaaag 260
Query: 61 taggagtgtgtaggcttggtgatctggatagagctgtgggtagcatggaaatccatgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggagtgtgtaggcttggtgatctggatagagctgtgggtagcatggaaatccatgtta 320
Query: 121 gttcctttggaggagctactgagacagcttgtgttctaaagtatgagagcttggaccatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcctttggaggagctactgagacagcttgtgttctaaagtatgagagcttggaccatc 380
Query: 181 acgatgacatccttatgcttctgagccagatgtaaaatagcctcatgcacagacatggaa 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 acgatgacatccttatgcttctgagccggatgtaaaatagcctcatgcacagacatggaa 440
Query: 241 gttctcaatgtggaactgaagccggaatgtttcattttgggtcacattatgtaatcttat 300
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggctcaatgtggaactgaagccggaatgtttcattttgggtcacattatgtaatcttat 500
Query: 301 cctttgaacagtgaaag 317
|||||||||||||||||
Sbjct: 501 cctttgaacagtgaaag 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
