BAC Information

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BAC

Clone NameMSMg01-342F18
Chromosome5 (Build37)
Map Location 10,514,425 - 10,514,934
singlet/doubletsinglet
Overlap geneLOC100041395
Upstream geneGrm3, LOC100042768, LOC625446, LOC435832, LOC381612, EG625586
Downstream geneLOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342F18.T7 (MSMg01no342_f18.b1)MSMg01-342F18.TJ (MSMg01no342_f18.g1)
ACCAG455931AG455932
length736745
length of high quality
(start - end)		521 (32 - 552)458 (64 - 521)
definitionCHROMAT_FILE: MSMg01no342_f18.b1 PHD_FILE: MSMg01no342_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:51 2005CHROMAT_FILE: MSMg01no342_f18.g1 PHD_FILE: MSMg01no342_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCACTATTTCCAGAGGATCCGCGGAATTCTATAATT
TCTTGCAATAGTGTCATAAAATTAGTCCTGGCTCATGGGTATTTGAGTGG
CAATCATTTTTCTTAAACTTTAAATAAACAATTAGATCATTTTATTTCCA
AAGTTTAATATCAATTATATTAATGCATGACCTACAAAACAATTGAACTT
CCATCATCCTAAACTGAAACCCACTGTTCAAATAATGTAATTCAGAACCT
GCATACAATGACAACTCTGGCAGTTTGTGAAGTGCACTATGCTATATTCT
GTAACTATCTGTGAACTAAAACCATGCTAAATACAATGGTGCTAATAAAA
TTCTAATTTAAATAAAATATTTACATCAGAAATAAATTATACTGTAATTC
AGGCATATCATATATCGTATATACAGTATACACACACACAAATGTGTATA
TCTATATATATATATGCTAAAGAAGTTCTTATACCCCTCAATAGTACTTC
CAGACCAACATATCTCATTCTTAAACTCCACTCACATGTTTCCTTCATTC
ACATTAATTTATAATGAATATATTCACTTGTCTCTATACCCATTTTTCTA
TTCCTTTCCTGAAAAATTGAAATTTTCTGAAGATTTTTTGCCTACCATTT
TTTAAAAAAAAAGATAAAGCCCGCTTTTATTTTAAAACCTTTAAAATTTG
TTATTAACCCCCAAAAAGACATTTTTTGTTTTTTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCTGTTTAGATATTTATCCTATTTTAATTAGATTATT
TGGTTTGTTGATATTTAGTTTTTGAGTTCTTTATATATTTTAGATATTAG
TTTTTTTTTGTGAAATGTAGAGTTGATGAAACTTTTTCCATTTGGTAGGG
TGTTGTAGAAATTATTTAATCCTGACCCAGGGATTCTACTTTGCTTTTGA
CCATTTAGTTCACATACACACACACACACCATTTTTATATTTAAATAAGC
CTTAATCAGCACTAGAGCTGGGCCACACATCTACCCTGTATGCTATCAGA
ATTTATATTCCTATTGATAACCTCAAATTATTATTTATTATTTACTACAT
TTCATCTGGGCTATTGCTAATTCCAATTGGCCAGGCCTCGGGCCATGATC
TCTTGACTCACCTTAATCACAGTGACTTCTTTTTTCTCCTGCACCTTCTT
TTCCTGTGCTCTCTTTCCATCCCAAGCCCAGGAATCCTAAACTCCACCTA
TAACTTCTGGCCCACTTATTGGCTGTTGGCATCTTTTATTTACCATCCGA
ATAAATTGGGGGGGCAGGGCCCAAGGTTTCATACAGATTCCAGGGCTTAA
GGGGGGGACATGTTAAATTTGTAGAGGAAAAACCGCTACCCCTCCCCAAG
GGGGAGGTTTGCCCACCTATATATGCCTTCGTTTTTATCAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_f18.b1 MSMg01no342_f18.b1 CHROMAT_FILE:
MSMg01no342_f18.b1 PHD_FILE: MSMg01no342_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:51 2005
         (521 letters)



>mm_chr5_10514425_10515344
          Length = 920

 Score =  895 bits (463), Expect = 0.0
 Identities = 493/511 (96%), Gaps = 15/511 (2%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctataatttcttgcaatagtgtcataaaattagtcctggctcatgggtatttgag 66
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattctataatttgttgcaatagtgtcataaaattagtcctggctcatgggtatttgag 451

                                                                       
Query: 67  tggcaatcatttttcttaaactttaaataaacaattagatcattttatttccaaagttta 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tggcaatcatttttcttaaactttaaataaacaattagatcattttatttccaaagttta 391

                                                                       
Query: 127 atatcaattatattaatgcatgacctacaaaacaattgaacttccatcatcctaaactga 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atatcaattatattaatgcatgacctacaaaacaattgaacttccatcatcctaaactga 331

                                                                       
Query: 187 aacccactgttcaaataatgtaattcagaacctgcatacaatgacaactctggcagtttg 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 330 aacccactgttcaaataatgtaattcagaacctgcatacaatgacaactctgccagtttg 271

                                                                       
Query: 247 tgaagtgcactatgctatattctgtaactatctgtgaactaaaaccatgctaaatacaat 306
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 270 tgaagtgcactatgctatattctgtaac-atctgtgaactaaaaccatgctaaatacaat 212

                                                                       
Query: 307 ggtgctaataaaattctaatttaaataaaatatttacatcagaaataaattatactgtaa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ggtgctaataaaattctaatttaaataaaatatttacatcagaaataaattatactgtaa 152

                                                                       
Query: 367 ttcaggcatatcatatatcgtatatacagtat--acacacacacaaatgtg--------- 415
           ||||||||||||||||||||||||||||||||  |||||||||||||||||         
Sbjct: 151 ttcaggcatatcatatatcgtatatacagtatacacacacacacaaatgtgtgtgcatat 92

                                                                       
Query: 416 ---tatatctatatatatatatgctaaagaagttcttatacccctcaatagtacttccag 472
              ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  atatatatatatatatatatatgctaaagaagttcttatacccctcaatagtacttccag 32

                                          
Query: 473 accaacatatctcattcttaaactccactca 503
           |||||||||||||||||||||||||||||||
Sbjct: 31  accaacatatctcattcttaaactccactca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 920
Length adjustment: 10
Effective length of query: 511
Effective length of database: 910
Effective search space:   465010
Effective search space used:   465010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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