BAC Information

Click to search

BAC

Clone NameMSMg01-342F19
Chromosome5 (Build37)
Map Location 20,638,898 - 20,858,448
singlet/doubletdoublet
Overlap geneA530088I07Rik
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903
Downstream geneFgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342F19.T7 (MSMg01no342_f19.b1)MSMg01-342F19.TJ (MSMg01no342_f19.g1)
ACCAG455933AG455934
length741761
length of high quality
(start - end)		474 (33 - 506)482 (61 - 542)
definitionCHROMAT_FILE: MSMg01no342_f19.b1 PHD_FILE: MSMg01no342_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:51 2005CHROMAT_FILE: MSMg01no342_f19.g1 PHD_FILE: MSMg01no342_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,638,898 - 20,639,367)(20,857,967 - 20,858,448)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTGTTC
CCTCTGATACATTGAAAGGTTGCTATTAGTTTATCATTTTTTTGAACTGG
AGAAACTGGCCTCCATTTTGAGTCTCCGTTCTGCCCACAAACTGGCCATC
TGAAGGAGATAAAAGTGATTGTGGCCCTTTGCTGCTAAAATATCCTCTGT
GGATCCCTGTTGCTTTCAGAGGAACACTGGGACACAAAGGCTTCTTGACG
GTCCTGCATCCACCCACTCCTTATCTGCCAGCACACTTTCCACTTTGCAC
ATGTTTTACCCATTGAGCTTCCCGAAGCATACCAAGTTCACTTAGCACAT
GTTTTCTTTACTCTGCACTTCAATAATACAGCAGGTGCCTCCTGTTTTCA
ATGGCTCCCCAATCCTTCATGTCAGACTCAGCCACCACATCCTTCCATGG
TTTCTTCCTGCTTCCTCCTCCGACTGCTAGTCTTCCAGTATGTGGATGAT
CTTTCAAGGCCTGCCCCTTTGTATGCCTCTCTTCTCTCTAGAAGGACCAA
CATTTTATTGTTTATAAAGAGAATTAAACCCGCCTTAACTTTTTACCCCC
CCAATATGGAAATCTTGGGGCATAATAAGGACTCTTTTTATGGCCCTCCA
AAGAAATGAAGCGGGGAAAGCCCCCAAAAAAATATTTTTTTTGGTACACC
TTTAAACGGGCGTTTTTTTGCCCCTTTGGGGTTTAAAATTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCTTTGCCATGGAAAGTAACAAATACACATTCCAGGAGTT
AAGACGTGGGCCTCTTGGTGAGAGCATTAATCTACCTAATACAGGAACTA
TTTCATGGCACTGAAATGACCAGTGGACCTTAAAGACAGAAGACAGGTTA
AGAGGGGTTGCAGCTTCTGGATAACAAAGACCCTGCACATCATGTAATAG
AAGCTTAAGTGCTGAGGCCAAGGTGAGAATTGTGTCATCTGGTAGCTTAT
ACGAAGGACAGAGTCAAGGTAGATAAGACATAAATCTGTGAAAGCTGTGC
ATTGCCAACATCTTAGTAAGGAGGGATAAGGCTTTGTGCATGGCACTTTG
TAGATTGTCTAAAACAATCGAGAAGAACGTAATTCAACAGGATTTATAGA
AGAAATCCCCATAGTGCAGAAGCCATGCTTCTTTACGGGGTAGGGCCAAA
TCTTGAGGAACACTAACTTTTTTTTCAAAATTTATTTTTTATTACACTAT
TAAAATTTATTTTAAAATATACAACTCAGTATTTGACTCCTTTAAGGCCT
CCAAAAAAATTTATAATAGCTAAATGGCCCCTTAAATAAACATGGGATCT
TCTGGAAAATAAAAGAAAAATGGACCCCCCCCGTTTTTTTAATCACTTTT
GAACCTTTTATCTGGGTGGAGATAGAAAAAAAATTCTTATTAAGCCCCCC
CTGAAAGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_f19.b1 MSMg01no342_f19.b1 CHROMAT_FILE:
MSMg01no342_f19.b1 PHD_FILE: MSMg01no342_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:51 2005
         (474 letters)



>mm_chr5_20638694_20639567
          Length = 874

 Score =  855 bits (442), Expect = 0.0
 Identities = 463/470 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttgttccctctgatacattgaaaggttgctattagtttatcatttttttgaa 64
           ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattctcttgttacttctgatacattgaaaggttgctattagtttatcacttttttgaa 264

                                                                       
Query: 65  ctggagaaactggcctccattttgagtctccgttctgcccacaaactggccatctgaagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctggagaaactggcctccattttgagtctccgttctgcccacaaactggccatctgaagg 324

                                                                       
Query: 125 agataaaagtgattgtggccctttgctgctaaaatatcctctgtggatccctgttgcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 agataaaagtgattgtggccctttgctgctaaaatatcctctgtgaatccctgttgcttt 384

                                                                       
Query: 185 cagaggaacactgggacacaaaggcttcttgacggtcctgcatccacccactccttatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagaggaacactgggacacaaaggcttcttgacggtcctgcatccacccactccttatct 444

                                                                       
Query: 245 gccagcacactttccactttgcacatgttttacccattgagcttcccgaagcataccaag 304
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 445 gccagcacactttccactttgcacatgttgaacccattgagcttcccgaagcataccaag 504

                                                                       
Query: 305 ttcacttagcacatgttttctttactctgcacttcaataatacagcaggtgcctcctgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 ttcacttagcacatgttttctttactctgcacttcaataatacagcaggcgcctcctgtt 564

                                                                       
Query: 365 ttcaatggctccccaatccttcatgtcagactcagccaccacatccttccatggtttctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcaatggctccccaatccttcatgtcagactcagccaccacatccttccatggtttctt 624

                                                             
Query: 425 cctgcttcctcctccgactgctagtcttccagtatgtggatgatctttca 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctgcttcctcctccgactgctagtcttccagtatgtggatgatctttca 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no342_f19.g1 MSMg01no342_f19.g1 CHROMAT_FILE:
MSMg01no342_f19.g1 PHD_FILE: MSMg01no342_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:51 2005
         (482 letters)



>mm_chr5_20857684_20858565
          Length = 882

 Score =  924 bits (478), Expect = 0.0
 Identities = 481/482 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttgccatggaaagtaacaaatacacattccaggagttaagacgtgggcctcttggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tctttgccatggaaagtaacaaatacacattccaggagttaagacgtgggcctcttggtg 706

                                                                       
Query: 61  agagcattaatctacctaatacaggaactatttcatggcactgaaatgaccagtggacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agagcattaatctacctaatacaggaactatttcatggcactgaaatgaccagtggacct 646

                                                                       
Query: 121 taaagacagaagacaggttaagaggggttgcagcttctggataacaaagaccctgcacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 taaagacagaagacaggttaagaggggttgcagcttctggataacaaagaccctgcacat 586

                                                                       
Query: 181 catgtaatagaagcttaagtgctgaggccaaggtgagaattgtgtcatctggtagcttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 catgtaatagaagcttaagtgctgaggccaaggtgagaattgtgtcatctggtagcttat 526

                                                                       
Query: 241 acgaaggacagagtcaaggtagataagacataaatctgtgaaagctgtgcattgccaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 acgaaggacagagtcaaggtagataagacataaatctgtgaaagctgtgcattgccaaca 466

                                                                       
Query: 301 tcttagtaaggagggataaggctttgtgcatggcactttgtagattgtctaaaacaatcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tcttagtaaggagggataaggctttgtgcatggcactttgtagattgtctaaaacaatcg 406

                                                                       
Query: 361 agaagaacgtaattcaacaggatttatagaagaaatccccatagtgcagaagccatgctt 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 405 agaagaacgtaattcaacaggatttataaaagaaatccccatagtgcagaagccatgctt 346

                                                                       
Query: 421 ctttacggggtagggccaaatcttgaggaacactaacttttttttcaaaatttatttttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctttacggggtagggccaaatcttgaggaacactaacttttttttcaaaatttatttttt 286

             
Query: 481 at 482
           ||
Sbjct: 285 at 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |