Query= MSMg01no342_i14.b1 MSMg01no342_i14.b1 CHROMAT_FILE:
MSMg01no342_i14.b1 PHD_FILE: MSMg01no342_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:05 2005
(383 letters)
>mm_chr5_144117368_144118149
Length = 782
Score = 725 bits (375), Expect = 0.0
Identities = 381/383 (99%), Gaps = 1/383 (0%)
Strand = Plus / Plus
Query: 1 cattggtgacaagtgacacaagccatctcacttcccatcacctagacgacatttcctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattggtgacaagtgacacaagccatctcacttcccatcacctagacgacatttcctctt 260
Query: 61 aattcaccaaagctctagccttctcccttgctaacactccaggttctaagcagtgactcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattcaccaaagctctagccttctcccttgctaacactccaggttctaagcagtgactcc 320
Query: 121 ttggatctccttgggagggctgcttccctgaagagtgagtccctgacagtgactactcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggatctccttgggagggctgcttccctgaagagtgagtccctgacagtgactactcta 380
Query: 181 tcaggtctcctcccctgagcccagctagagccagaatccctccccctccccctcccccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tcaggtctcctcccctgagcccagctagagccagaatccctccccctccccctcccctac 440
Query: 241 ccccacctcccaccgcagcccatcagtcacaccatcccccactagcagaagggattttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 ccccacctcccaccgcagcccatcagtcacaccatcccccactagcagaagggattt-gg 499
Query: 301 ttcaaagggaaaccctcaagtcagtggccacggaaggaacaaaagcttgaggcctgcggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttcaaagggaaaccctcaagtcagtggccacggaaggaacaaaagcttgaggcctgcggg 559
Query: 361 gctacacagttagttcaggagca 383
|||||||||||||||||||||||
Sbjct: 560 gctacacagttagttcaggagca 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 782
Length adjustment: 9
Effective length of query: 374
Effective length of database: 773
Effective search space: 289102
Effective search space used: 289102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_i14.g1 MSMg01no342_i14.g1 CHROMAT_FILE:
MSMg01no342_i14.g1 PHD_FILE: MSMg01no342_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:05 2005
(452 letters)
>mm_chr5_144260900_144261751
Length = 852
Score = 634 bits (328), Expect = 0.0
Identities = 362/382 (94%), Gaps = 15/382 (3%)
Strand = Plus / Minus
Query: 78 caggacacattcaagaagagaacgtgccggggcgtggtggtgcacgcctttaatcccggc 137
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 852 caggacacattcaagaagagaacgtgccggggcgtggtggcgcacgcctttaatcccagc 793
Query: 138 acttgggaggcagaggcaggcggatttctgagttcgaggccagccttgtctataaagtga 197
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 792 acttgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaagtga 733
Query: 198 gttccaggacagccaggactacacagggaaaccctgtctcgaaaaacctcttaaaaaaaa 257
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 732 gttccaggacagccaggactacacagggaaaccctgtctcgaaaaaccac--aaaaaaaa 675
Query: 258 aaaaaaaaaaaaaa-------------agagagagaatgtacagctaaaccctcagatga 304
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 674 aaaaaaaaaaaaaaaaaaaagagagagagagagagaatgtacagctaaaccctcagatga 615
Query: 305 tccctgggacccagcagacccagatggcacaacctcccaaggtgccctggcagtttctaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tccctgggacccagcagacccagatggcacaacctcccaaggtgccctggcagtttctaa 555
Query: 365 gcaggcagaggcaagaggctagccataggtcaggctggcccagggcgctgacacaggcct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gcaggcagaggcaagaggctagccataggtcaggctggcccagggcgctgacacaggcct 495
Query: 425 gtgatcccagccactcaggagc 446
||||||||||||||||||||||
Sbjct: 494 gtgatcccagccactcaggagc 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
