BAC Information

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BAC

Clone NameMSMg01-342K18
Chromosome5 (Build37)
Map Location 103,796,863 - 104,011,277
singlet/doubletdoublet
Overlap geneLOC100041049, Ptpn13
Upstream geneLOC625780, Arhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik
Downstream geneSlc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342K18.T7 (MSMg01no342_k18.b1)MSMg01-342K18.TJ (MSMg01no342_k18.g1)
ACCAG456166AG456167
length726737
length of high quality
(start - end)
244 (55 - 298)417 (61 - 477)
definitionCHROMAT_FILE: MSMg01no342_k18.b1 PHD_FILE: MSMg01no342_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:15 2005CHROMAT_FILE: MSMg01no342_k18.g1 PHD_FILE: MSMg01no342_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,011,034 - 104,011,277)(103,796,863 - 103,797,275)
sequence
GCGCTATACGACTCACAAATGCGAGAGGAGCCGCGGAATTCAAATATACA
CAATCACAGAAGCTGCCTGCAGTTGGCAAAACCATACCTCTGCTAGAACA
TGAGGCCAACCACAGTCAGCTACTTTTTCTTTATACTTTTTCACATCCTT
TATATAGTTTCAGTTTATGTAATACAGGTCTCGACCTTTTAAAAAAATGT
GTTAATTATAGGTAAGAGAGATCAGAGGTGTGGTAAGGTAGATAGATCTC
AGGTGTGGTAAGAGTAGAGGTGTGGGCCTCCTGATCAATACAACTGGTGT
TTTTATTGAAGAGGCACAGATGCCAGGCAGGAGCTAATACAGAGGGAAGG
TCAAAAACAGGAGAAGAAAAGTGTGGACAGAATTATTAAAAAGGAATTTT
ATATTAATAGTTACATTTAAAGTTATTTTTATAATGAAAATATATCCTAA
AAACCAATATAATTAAAGTTTTCTGACATAAATGACTGTTACTATGGGTC
ATTATAATGAAGAATCTACATTATATGCTTTTTCTCCTTTTTAAGAGAAA
ATACATTTTAGAGGGCAATTTTTAACATAGTACACAAAGCTTTAATTTTA
CTTGCAGCTAAAAGGGAACCTCTCAATATTCTTCATTAAACTTCTGTTTC
AACATATTGTTCTGTAAATATCTTTTACTTTGTTATATTGGTAAAATTCT
TGCCCCTCTCTAAGAAATTTGTGTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCACTTGGTAAATTCTTGGTCTTCCAGGAAGGTGGAGGTTA
ATTCCCCCCGCAGGCCCCCTCCTGCTTCAGTGGCCTGTTTCCAGAGAATG
TAACCAGAAGCATTGAGACTTCACTAAGAAGAAATCTGGCAAGCAACAGG
GGAGACTCACATCATCAACACGAGCTTGTTGGATGCCCGTATACCTGAGA
GGCTGTGAGGGAAGGTGCTTCTTTCTAGAACGTTCTAATCACAAAAAGAT
CAGGTATCCCCAGTTCAGAGGAGTTTTCTACAAAAGACCTATCCAGCTCA
GTGCCTCACAGACAAGCTAGGAACCAGGACAGACCAACGGACAGGACAAC
TTACCATAATGCCATGTTCCAGCTTGGGTCTTAGGATAGAAAAAAAAAAA
AAAAAAAAAAAGGTATTGCTGGGGGGCCGGGGTGGTGGTGGCGAATAACC
AAGACAAAAACAACATCTAACCTAGTGAAATCTAGAGTCCGAAATTTAGT
TAATAGGGACAGGGTTTCTCCGGAGAGCCCTGGCTGTCCTGTAACTCACT
CTGAAGAGCATGTTGGCCTTCAATCCCAAAAATTTGTTTGTCTTCTCGCC
CCTACCTGCTGGGAATAAAAGGGAAGGGTACTTTATTTGTCCTCTTTATT
CTTCTGTTTCCCCTATTGGTTCTTTTTTTCCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_k18.b1 MSMg01no342_k18.b1 CHROMAT_FILE:
MSMg01no342_k18.b1 PHD_FILE: MSMg01no342_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:15 2005
         (244 letters)



>mm_chr5_104010764_104011407
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagaagctgcctgcagttggcaaaaccatacctctgctagaacatgaggccaaccaca 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 514 cacagaagctgcctgcagttggcaaaaccacacctctgctagaacatgaggccaaccaca 455

                                                                       
Query: 61  gtcagctactttttctttatactttttcacatcctttatatagtttcagtttatgtaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtcagctactttttctttatactttttcacatcctttatatagtttcagtttatgtaata 395

                                                                       
Query: 121 caggtctcgaccttttaaaaaaatgtgttaattataggtaagagagatcagaggtgtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caggtctcgaccttttaaaaaaatgtgttaattataggtaagagagatcagaggtgtggt 335

                                                                       
Query: 181 aaggtagatagatctcaggtgtggtaagagtagaggtgtgggcctcctgatcaatacaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaggtagatagatctcaggtgtggtaagagtagaggtgtgggcctcctgatcaatacaac 275

               
Query: 241 tggt 244
           ||||
Sbjct: 274 tggt 271


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no342_k18.g1 MSMg01no342_k18.g1 CHROMAT_FILE:
MSMg01no342_k18.g1 PHD_FILE: MSMg01no342_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:15 2005
         (417 letters)



>mm_chr5_103796663_103797479
          Length = 817

 Score =  774 bits (400), Expect = 0.0
 Identities = 411/416 (98%), Gaps = 3/416 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttggtaaattcttggtcttccaggaaggtggaggttaattccccccgcaggccccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttggtaaattcttggtcttccaggaaggtggaggttaattccccccgcaggccccct 260

                                                                       
Query: 61  cctgcttcagtggcctgtttccagagaatgtaaccagaagcattgagacttcactaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgcttcagtggcctgtttccagagaatgtaaccagaagcattgagacttcactaagaa 320

                                                                       
Query: 121 gaaatctggcaagcaacaggggagactcacatcatcaacacgagcttgttggatgcccgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatctggcaagcaacaggggagactcacatcatcaacacgagcttgttggatgcccgt 380

                                                                       
Query: 181 atacctgagaggctgtgagggaaggtgcttctttctagaacgttctaatcacaaaaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacctgagaggctgtgagggaaggtgcttctttctagaacgttctaatcacaaaaagat 440

                                                                       
Query: 241 caggtatccccagttcagaggagttttctacaaaagacctatccagctcagtgcctcaca 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtatccccagttcagaggacttttctacaaaagacctatccagctcagtgcctcaca 500

                                                                       
Query: 301 gacaagctaggaaccaggacagaccaacggacaggacaacttaccataatgccatgttcc 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gacaagctaggaaccaggacagaccaatggacaggacaacttaccataatgccatgttcc 560

                                                                   
Query: 361 agcttgggtcttaggatagaaaaaaaaaaaaaaaaaaaaaaggtattgctgggggg 416
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 561 agcttgggtcttaggatagaaaaaaaaaaaaaaaaaaa---ggtattgctgggggg 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)