Query= MSMg01no342_k18.b1 MSMg01no342_k18.b1 CHROMAT_FILE:
MSMg01no342_k18.b1 PHD_FILE: MSMg01no342_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:15 2005
(244 letters)
>mm_chr5_104010764_104011407
Length = 644
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%)
Strand = Plus / Minus
Query: 1 cacagaagctgcctgcagttggcaaaaccatacctctgctagaacatgaggccaaccaca 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 514 cacagaagctgcctgcagttggcaaaaccacacctctgctagaacatgaggccaaccaca 455
Query: 61 gtcagctactttttctttatactttttcacatcctttatatagtttcagtttatgtaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtcagctactttttctttatactttttcacatcctttatatagtttcagtttatgtaata 395
Query: 121 caggtctcgaccttttaaaaaaatgtgttaattataggtaagagagatcagaggtgtggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caggtctcgaccttttaaaaaaatgtgttaattataggtaagagagatcagaggtgtggt 335
Query: 181 aaggtagatagatctcaggtgtggtaagagtagaggtgtgggcctcctgatcaatacaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaggtagatagatctcaggtgtggtaagagtagaggtgtgggcctcctgatcaatacaac 275
Query: 241 tggt 244
||||
Sbjct: 274 tggt 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no342_k18.g1 MSMg01no342_k18.g1 CHROMAT_FILE:
MSMg01no342_k18.g1 PHD_FILE: MSMg01no342_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:15 2005
(417 letters)
>mm_chr5_103796663_103797479
Length = 817
Score = 774 bits (400), Expect = 0.0
Identities = 411/416 (98%), Gaps = 3/416 (0%)
Strand = Plus / Plus
Query: 1 cacttggtaaattcttggtcttccaggaaggtggaggttaattccccccgcaggccccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttggtaaattcttggtcttccaggaaggtggaggttaattccccccgcaggccccct 260
Query: 61 cctgcttcagtggcctgtttccagagaatgtaaccagaagcattgagacttcactaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgcttcagtggcctgtttccagagaatgtaaccagaagcattgagacttcactaagaa 320
Query: 121 gaaatctggcaagcaacaggggagactcacatcatcaacacgagcttgttggatgcccgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatctggcaagcaacaggggagactcacatcatcaacacgagcttgttggatgcccgt 380
Query: 181 atacctgagaggctgtgagggaaggtgcttctttctagaacgttctaatcacaaaaagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacctgagaggctgtgagggaaggtgcttctttctagaacgttctaatcacaaaaagat 440
Query: 241 caggtatccccagttcagaggagttttctacaaaagacctatccagctcagtgcctcaca 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtatccccagttcagaggacttttctacaaaagacctatccagctcagtgcctcaca 500
Query: 301 gacaagctaggaaccaggacagaccaacggacaggacaacttaccataatgccatgttcc 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gacaagctaggaaccaggacagaccaatggacaggacaacttaccataatgccatgttcc 560
Query: 361 agcttgggtcttaggatagaaaaaaaaaaaaaaaaaaaaaaggtattgctgggggg 416
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 agcttgggtcttaggatagaaaaaaaaaaaaaaaaaaa---ggtattgctgggggg 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|