BAC Information

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BAC

Clone NameMSMg01-342M15
Chromosome5 (Build37)
Map Location 58,524,514 - 58,524,676
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342M15.T7 (MSMg01no342_m15.b1)MSMg01-342M15.TJ (MSMg01no342_m15.g1)
ACCAG456256AG456257
length738733
length of high quality
(start - end)
357 (58 - 414)165 (69 - 233)
definitionCHROMAT_FILE: MSMg01no342_m15.b1 PHD_FILE: MSMg01no342_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:24 2005CHROMAT_FILE: MSMg01no342_m15.g1 PHD_FILE: MSMg01no342_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTT
CCTTCTGTCCTCTACCATCATCATGAGATATGCTTTTAAATCCAGGTCTA
CCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGGCGTTCTG
GGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGATTCTTACG
TTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAGTTGTCT
TTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATCAGCAGGC
GTGGTTTTTTTTCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCAGTCTCTG
TATGCCAGCTCTCCTCTCTCAGGGAAGGTGTACAGTTATCTGGTGTTTGG
ACCTCCTCCTGGCTGAAGGTGAAGGTCCAAAACAGGATTTTTCCTAGAAG
CTGTGTTGCTTTGGCCTTCAATGTTGGCCATTTGCCTGTATCCCGAACTT
GCCCCCATCTTTTCAAATCTTGTGCGTTTTCGTTTGCTATTTCGGTGGTT
CTTCTTGCCTTTCATCCTCAAAGCCCGCTTCTTCTTTTTCGCATTATTTG
CCCCCCCGTTCTCAATTTTTTTTGTTCTGCGTTCCACCCTTCTTTTTTTT
TTCTTTTTTTGCCCCTCTTTTAACTACCCTTCCTCTTTTATTTCTTCTCC
TCCGCCTCTCCGTTTTTTTTTTTCATTTCTTCCCCCCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTTTTGACAGGGAAGAAAGTGACTGAGTGCC
TGTATCATTGTGATTTAATATGCATTGCTTTCTGCTAGGTTAAGGTAAAT
CAAGGCAAATGATGGGATGGTAATTGAAAATTGAGAGTGAAGCATGTGTT
GGGGTGGGGGTCTCTACNAGGGTCAGATATCTTAACGATGTTGAGAGAAT
GAAAACTCATTTCAGATGACTTTGTCAACCTGGACCAAACCTTTTAGAGT
GTCTGATATCTTTTGACTTATTTCCACCACATTTGAAAATGCCGTAAATT
GCATACTAGCTTCCAGGGGTGCGACAATCCCTGTCTCTTATGTAAGTGTT
CCTCCCCCTTTCCTCCTTTTTATTTCCTTTTCACTTTTTTTCCACTTTGT
GCCCCCCCCCTCCCTTTCCTTCACTTGCATTTTCACCCCCTTCCTATACC
CCCCCTTTTCCCCCCCCTTCCCCCTTTCTCTCCTTTTGGTTTTTCCCCCC
CTCTGCTCCCCTTTTTTATTCTTTTCCTCCTCCCCTCTCTCTTTCCTCCT
TTCTTTTCTTTTCTTCTTTGTCCCCCCGCTCCCCTCCTTCCCACTTTCCC
TCTTCCCCTACCCCCCCCTACTTCTCTTCCTACTTTCCCCCCTCCCTTTT
TCTCCTTCTCCCCCCCTCCCTTTTTTTTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_m15.g1 MSMg01no342_m15.g1 CHROMAT_FILE:
MSMg01no342_m15.g1 PHD_FILE: MSMg01no342_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:24 2005
         (165 letters)



>mm_chr5_58524314_58524878
          Length = 565

 Score =  310 bits (160), Expect = 4e-89
 Identities = 162/163 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttttgacagggaagaaagtgactgagtgcctgtatcattgtgatttaatatgcattgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttttgacagggaagaaagtgactgagtgcctgtatcattgtgatttaatatgcattgc 260

                                                                       
Query: 61  tttctgctaggttaaggtaaatcaaggcaaatgatgggatggtaattgaaaattgagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctgctaggttaaggtaaatcaaggcaaatgatgggatggtaattgaaaattgagagt 320

                                                      
Query: 121 gaagcatgtgttggggtgggggtctctacnagggtcagatatc 163
           ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gaagcatgtgttggggtgggggtctctacaagggtcagatatc 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)