BAC Information

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BAC

Clone NameMSMg01-342M18
Chromosome5 (Build37)
Map Location 5,210,061 - 5,210,471
singlet/doubletsinglet
Overlap genePftk1
Upstream geneFzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342M18.T7 (MSMg01no342_m18.b1)MSMg01-342M18.TJ (MSMg01no342_m18.g1)
ACCAG456262AG456263
length730767
length of high quality
(start - end)
488 (55 - 542)411 (62 - 472)
definitionCHROMAT_FILE: MSMg01no342_m18.b1 PHD_FILE: MSMg01no342_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:25 2005CHROMAT_FILE: MSMg01no342_m18.g1 PHD_FILE: MSMg01no342_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCAGAACTTCC
CAGCTGGGGAACAGAAGTACCAGTGAGTACAGCTTTACAAGGCAAGTCTG
GTCTTGAACTTTCTAAGGAAATTCAAGACAGTCTATCAGAAGTAAAGTGG
GGAATAGCTTTACAAGGTACGCCTGGCCTTGAACTTTCTAACGAAATTCA
AGACAGTCTATCAGAAGTAAAGTGGAAAATAGCTTTACAAGGTATGTTTG
GCCTTGAATTTTTTCTAGTGTTAGGAGCCCTTTTGTTCTTTTTCACATGT
TATTTTGTGATTAAGATAGGGCTAAAAATTCTGGATAAAATTCAGGACAA
TCTATCAGAAGTAAAGCGGGGAGAGAGAATAGGAGCAAAGAGAAAATATG
GTTCACAAAATAAGTATATAGGCCTTTCCAAGGGTCTTGAACCCGAGGAA
AAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTAGAAGGAAGGAGAA
GGAAAAAGAAAAGAAAAAAGATCAATTAGCGGAGGTCTCTAGGAGAAGGA
GCCTATACTCATCACTAGGTGAGCTCAAGGAGCCAGTTCTTAATAGTTCT
GAATCAGATGAAAAAGCTATTACGGCCTGGAAGGTGCTCTCCCGATCAAG
TGAAGCCCCTGGACATTTAATAAGATCTTCCAGGGACCTCCGGAGTTCTT
CTCAAATTTTGTGGCCCGATGCAAAAAACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTGCAACCACATGGTGGCTTACAACCATCTGTAATGGG
ATCCTACTATGCTCTCTTCTGGTGCATGTGAAGGCAGCTACAATGTATTC
ATATACATAAAATAAATAAATAAATCTTTAAAAAAATGAAAATTCAGGAG
TCGTTTAATTTATGAAGAAAAGACACACCAGGCCATCTTCCTGAAAGGCA
GCAATGATCATGTGTAACTTGGTATTGTTTGGTTTCTTACATAGTCATAT
CTGATAAAAAGTATATCAGTTATTCATAACTCACATAAAATGCATTATTA
AAGTTATGTAGAATGTCATTCTTTGGAAAAGAACTGATGCATAAAAAACT
GGACAGCATACACACATGTTAAAGAGATACTGTGGAATAATGGAGTTCTT
ACTCAAATTGTGTCAGTATTTAGTGGATACTGTCACAAAACATGTATCNA
GGTATACTTANGATGCAACTCGTTTATGCCGTCCCAAAACATGTATTTTT
CCAGTTTTACAAACTTTTTTAAAAACACGCAAAATAAAAGAACAATTTTT
TTTTTAACTAAATGAATCCCACGGCCCCAAAAACAGTTTTGGGGGTGGAA
TGCAAAATTTTGTCATTTGGAGGAACCTGGGTTTTAATCCCCCAAACCTA
TAATAAATGGGTGGGGGATTCTTCTCCCCCTTCCAATCCCCCGAGAGAAA
AAAAAAGTTGGTGCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_m18.g1 MSMg01no342_m18.g1 CHROMAT_FILE:
MSMg01no342_m18.g1 PHD_FILE: MSMg01no342_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:25 2005
         (411 letters)



>mm_chr5_5209730_5210540
          Length = 811

 Score =  787 bits (407), Expect = 0.0
 Identities = 410/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgcaaccacatggtggcttacaaccatctgtaatgggatcctactatgctctcttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tctgcaaccacatggtggcttacaaccatctgtaatgggatcctactatgctctcttctg 683

                                                                       
Query: 61  gtgcatgtgaaggcagctacaatgtattcatatacataaaataaataaataaatctttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gtgcatgtgaaggcagctacaatgtattcatatacataaaataaataaataaatctttaa 623

                                                                       
Query: 121 aaaaatgaaaattcaggagtcgtttaatttatgaagaaaagacacaccaggccatcttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 622 aaaaatgaaaattcaggagtcgtttaatttatgaagaaaagacacaccaggccattttcc 563

                                                                       
Query: 181 tgaaaggcagcaatgatcatgtgtaacttggtattgtttggtttcttacatagtcatatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgaaaggcagcaatgatcatgtgtaacttggtattgtttggtttcttacatagtcatatc 503

                                                                       
Query: 241 tgataaaaagtatatcagttattcataactcacataaaatgcattattaaagttatgtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgataaaaagtatatcagttattcataactcacataaaatgcattattaaagttatgtag 443

                                                                       
Query: 301 aatgtcattctttggaaaagaactgatgcataaaaaactggacagcatacacacatgtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aatgtcattctttggaaaagaactgatgcataaaaaactggacagcatacacacatgtta 383

                                                              
Query: 361 aagagatactgtggaataatggagttcttactcaaattgtgtcagtattta 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aagagatactgtggaataatggagttcttactcaaattgtgtcagtattta 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)