Query= MSMg01no342_n12.b1 MSMg01no342_n12.b1 CHROMAT_FILE:
MSMg01no342_n12.b1 PHD_FILE: MSMg01no342_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:28 2005
(549 letters)
>mm_chr5_42727413_42728361
Length = 949
Score = 1035 bits (535), Expect = 0.0
Identities = 545/549 (99%), Gaps = 2/549 (0%)
Strand = Plus / Plus
Query: 1 gtatattgaataaatgctaaaaattacacacacagacacacacacacacaggtattgttt 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 203 gtatattgaataaatgctaaaaattacacacacag--acacacacacacaggtattgttt 260
Query: 61 taaaataaacttttattttaaatatccttaaatcattaaaataaatggtaaagtgatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaataaacttttattttaaatatccttaaatcattaaaataaatggtaaagtgatata 320
Query: 121 agtgcttatagacccaggaccagttaaaatctcccaggtagaaagaggtgagtgggatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgcttatagacccaggaccagttaaaatctcccaggtagaaagaggtgagtgggatgc 380
Query: 181 ttcggaaaccttgttttaaagaacactttgtagttgatgcccaggagcttgcttttctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcggaaaccttgttttaaagaacactttgtagttgatgcccaggagcttgcttttctat 440
Query: 241 ctaaataataaattgttcccaccttccaggaaacagactgtgggagactctgaatactga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaataataaattgttcccaccttccaggaaacagactgtgggagactctgaatactga 500
Query: 301 aaaacaaggtcaagttcagtacttacacaagaggttggagtggtcaatgaggagaagact 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 aaaacaaggtcaagttcagtacttacacaagaggttggagtggtcaatgaggagaagaat 560
Query: 361 ttaccctatgtcagtgagagatgctaattcagactaatgccatggcttatccatcttagc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaccctatgtcagtgagagatgctaattcagactaatgccatggcttatccatcttagt 620
Query: 421 tggcttctcccttccctgcagatgtttcttgttgccgttttttcaaaagcattgctggtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggcttctcccttccctgcagatgtttcttgttgccgttttttcaaaagcattgctggtg 680
Query: 481 atttatttgctcaaatgcatgaccactagcttgttttgctcctgatgaatgatttattca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttatttgctcaaatgcatgaccactagcttgttttgctcctgatgaatgatttattca 740
Query: 541 tgatatatg 549
|||||||||
Sbjct: 741 tgatatatg 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_n12.g1 MSMg01no342_n12.g1 CHROMAT_FILE:
MSMg01no342_n12.g1 PHD_FILE: MSMg01no342_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:28 2005
(475 letters)
>mm_chr5_42868852_42869726
Length = 875
Score = 919 bits (475), Expect = 0.0
Identities = 475/475 (100%)
Strand = Plus / Minus
Query: 1 acattgagttttactttacaatcattctgggtagaattggattactgtgaacagttggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 acattgagttttactttacaatcattctgggtagaattggattactgtgaacagttggtt 544
Query: 61 attggtatcgattcaagtttcttagaactctgcagggtactgagaaaaacctcagccaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 attggtatcgattcaagtttcttagaactctgcagggtactgagaaaaacctcagccaac 484
Query: 121 tgtagattcttgaatgtgttctcagtcaacatggctcacaaggaaaagcactaagaatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgtagattcttgaatgtgttctcagtcaacatggctcacaaggaaaagcactaagaatac 424
Query: 181 aagtgcaaattcaaagtttctgtccaaaacactataaatgaaaagccttacttggtttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aagtgcaaattcaaagtttctgtccaaaacactataaatgaaaagccttacttggtttgg 364
Query: 241 attctctgggtctaatctgcccattttatatgaagtgcagcaactatgtgggccttcaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 attctctgggtctaatctgcccattttatatgaagtgcagcaactatgtgggccttcaat 304
Query: 301 tataaagtgaaatggaaaaacacattattatcatatttctataattaaatatattggaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tataaagtgaaatggaaaaacacattattatcatatttctataattaaatatattggaat 244
Query: 361 gtaacaatagcctttttgattccagtcaactctgataatcatccaaacaaacaaacaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtaacaatagcctttttgattccagtcaactctgataatcatccaaacaaacaaacaacc 184
Query: 421 acaaaaaacaaaacaaacaaacaaacaaaagcttaggaaaatatagaagaaaata 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 acaaaaaacaaaacaaacaaacaaacaaaagcttaggaaaatatagaagaaaata 129
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
