BAC Information

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BAC

Clone NameMSMg01-343A11
Chromosome5 (Build37)
Map Location 52,515,438 - 52,515,819
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343A11.T7 (MSMg01no343_a11.b1)MSMg01-343A11.TJ (MSMg01no343_a11.g1)
ACCAG456438AG456439
length725756
length of high quality
(start - end)		537 (33 - 569)382 (68 - 449)
definitionCHROMAT_FILE: MSMg01no343_a11.b1 PHD_FILE: MSMg01no343_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:42 2005CHROMAT_FILE: MSMg01no343_a11.g1 PHD_FILE: MSMg01no343_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACCAGTG
TTCCAAAGAAGAACTAATACCAATACTCCTCAAACTATTCCACAAAACAG
AAACAGGAAGAACATTGCCAAACTCATTCTATGAGGCCACAGTCACCCTG
ATAGCTAAACCACACAAAGATGCAACCAAGAAAGATAACGTCAGACCAAT
TTCCCTTTTGAACATTGATGCAAAAGTATTTAATAAAATAATTAAAAACT
GAATCAAAGAACACACCAAAAACATCATCCACCATGATCAAGTAGGCTTC
ATCCCAGGGATGCAGGAATGACTCACTATACAAAAATTCATGAATGTAAT
TCACCTTATAAACAAACTGAAAGAAAAGAATCACATGATTATCTCACTAG
ATGCTGATAAAGCCTTTGACAATATCCAGTATCCTTTCATGTTCAAAATC
TTGGAGAGATCAGAGATACAAGGCATATACCTAAACACCATAAAGACAGT
ATGCAACAAGTCAATAGCCAATATCAAATTAAATGGTGAGAAACTTAAAA
CAATTCCACTAAAGTCAAGATAAGGTGGCTCACTTTCTCCGTATCTACTC
AATATAGTACCTGAAGTTCTAGCTACCACAATAAGACCACCAAAGGAGAT
CTAGGGGATACAAATTGGAAAGAAAAAAGCCAAAGTATCACTAATTCCCA
GATGATATGATAGATTGCACACGCG

CAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTGTGCTGGCTGACCTCACACCACATGAGGCT
TGGGAGACAAGGGGAAAGGGTCTTGAGATCAGAGAGGCAAGTTGCAGGAG
TCCCACCCTGAGGACTTTTCAGTTCCTTAAAGGAAATGTAGGGTTGTGGG
AAATCATGCCAGGTATGAGGGAGGGGACAGGCAGCTAAACTGAAGGAATT
GGTGTCACTTTTCAGATAGAGATTTTGATCCAAAGATCAATGAAAGTCAT
TAAAGGGAGGCTGGGATGCCACACATGCCTGAGATAGGCCCCTTTACACG
GTGAAGCATGCATGGTAGAGGGCAAGTGTGTATGGAAAAGACCTGCTAGA
CTTCTACTGTAAAATGAAGGTGGCAGCGCTGGCAGGGGCCAGGGCTGCTC
TAGGTAGCTAAGTAGGAAGGGATCTTGGATATAGGTTTTGAGAGGTCAGA
TTCTGCCTGGGTCACTCTGCTGACTCCTTTCTCTTCTTATGGCTCCCAAG
AATTCTAAGGTTTTTGTCCTCTTAAACTTCTTTGTTCCCTTTTCGTCATC
CGGGTTTCCAGGGACCTTCTTCCTAATAAAGTTTGCTTCCTTCTCCTTTT
TCCCCCCTTTATGTCAACCCCATCATGTTATTTTTTCCCTTCTCTTCCAT
CCTACATTTTCTTTTATTTTCCCTTTTTCCTTTATCTGTGTTCTAATTAA
CATTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_a11.g1 MSMg01no343_a11.g1 CHROMAT_FILE:
MSMg01no343_a11.g1 PHD_FILE: MSMg01no343_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:42 2005
         (382 letters)



>mm_chr5_52515238_52516019
          Length = 782

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtgctggctgacctcacaccacatgaggcttgggagacaaggggaaagggtcttgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agtgtgctggctgacctcacaccacatgaggcttgggagacaaggggaaagggtcttgag 523

                                                                       
Query: 61  atcagagaggcaagttgcaggagtcccaccctgaggacttttcagttccttaaaggaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atcagagaggcaagttgcaggagtcccaccctgaggacttttcagttccttaaaggaaat 463

                                                                       
Query: 121 gtagggttgtgggaaatcatgccaggtatgagggaggggacaggcagctaaactgaagga 180
           ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 462 gtaggattgtgggaaatcatgccaggtatgagggaggggacaggtagctaaactgaagga 403

                                                                       
Query: 181 attggtgtcacttttcagatagagattttgatccaaagatcaatgaaagtcattaaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 attggtgtcacttttcagatagagattttgatccaaagatcaatgaaagtcattaaaggg 343

                                                                       
Query: 241 aggctgggatgccacacatgcctgagataggcccctttacacggtgaagcatgcatggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aggctgggatgccacacatgcctgagataggcccctttacacggtgaagcatgcatggta 283

                                                                       
Query: 301 gagggcaagtgtgtatggaaaagacctgctagacttctactgtaaaatgaaggtggcagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gagggcaagtgtgtatggaaaagacctgctagacttctactgtaaaatgaaggtggcagc 223

                                 
Query: 361 gctggcaggggccagggctgct 382
           ||||||||||||||||||||||
Sbjct: 222 gctggcaggggccagggctgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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