BAC Information

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BAC

Clone NameMSMg01-343F18
Chromosome5 (Build37)
Map Location 36,724,192 - 36,899,475
singlet/doubletdoublet
Overlap geneSorcs2, Grpel1, Ccdc96, Tbc1d14
Upstream geneHmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, 2310020A21Rik
Downstream geneD5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343F18.T7 (MSMg01no343_f18.b1)MSMg01-343F18.TJ (MSMg01no343_f18.g1)
ACCAG456689AG456690
length798763
length of high quality
(start - end)		437 (34 - 470)384 (66 - 449)
definitionCHROMAT_FILE: MSMg01no343_f18.b1 PHD_FILE: MSMg01no343_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:10 2005CHROMAT_FILE: MSMg01no343_f18.g1 PHD_FILE: MSMg01no343_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,899,043 - 36,899,475)(36,724,192 - 36,724,575)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATTGTT
TTTCCTACGTGATTGGAAGTACAGATATACACTCCCACACTTGGCTTATA
GCCTACATTTTAATTTTCCTGATGCTTGTTATGTTTTGTTTGTGAACAAA
GGTATTTTAGGCTGTAATCAATTCTACCTTACCCGTCTTCCTTTTATGGC
ATGTGATTTCTTGTTACCTGTGTAGGATTGTTGCTGACTTCTGGAAGTTT
TGTTGTTTTGCCATTACCAGTAGATCTTCACATGCAGTATGCAGATTTTC
TTTCTCCCTGAACCTTTGAGGGAACCCAGTTGACTGTGTCCCGCCCTTAC
TTTCTCCTTCACTAACGCCATGGTATTCTTCAGTCAGCCATGTGAGAGAC
CGGGTAACTGCCTATGCTCTCCTGCTTGTTCTTCTGTGACATTACCTTGN
CAGCTTTGCTCCTTTGCATTTCCATATCAATTTTACAGTTTTGGCAGTTT
CTTTTTTGCAACAGTTCCCTATTGTTTTCTTAAATGTCGATTTTATGCTT
TTCTTTACTGTACATCTACTATTTTATGTCGTTTCCTCTTTTTTTTTTTT
CTATTCCCCCTTTTCTTCATCCTCTTTCTTGTTATTTTTTTACTTTTCCA
CATTTTCTTCTACTTTTTATTTCATTCTTTCTTTCTCCCTTCCTATTTTA
TCCCTCTGTTTCTTCTCCTCTCTTTTATTCCATTTCATTTCATTAACCAC
TCCCTCTTTTCTTTACCTCGCCCATCCCTTTTTTCTCACATATATTCN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAACAGAATCCAGAGCTTCGGGTGTAGACATCTTGG
CAACCTTGGGAAATACAGCCATCTTTAACCTAACTCTCACAGAGTGACCT
AGGAGACCTTTGGAAAGAAAGCAAAACAGAGAGCCAGGGTCCAGACAGCT
TGAGGGACACAAACTAGTACTTACATCAGAGTCTCTGGAGCTAGACATGC
CTGAAGCTGAAGCCAGTACTGGGTGATTTCAGTCTCTCCCTTCAGCTCTC
TGGAACTGGGCTTCTGTGACCCATGACCAAGCGTCCTGGTTTTGTGGCCC
ACATTGCAGAGCACACAAGCAGAGAAGGGAGTGAGAGCACCCAACCTTCA
CATAGCTTGAAAGCTAACTGGGAAGAGTTGTCGGCCAGAACACAGACAAT
CAAAGCCAAGAGCATGGCGTGCAGATGCGNGGAGAAAAGGGAGACCATGC
AGCTTCCCAGAGATGAAGGCCTTTGAGTGACGTTCCTCCGGAGATGCCCT
ACCCGTTGCTGGGCCCCTCCTTCCGTTTCTGGAAGAACCCCCCCCGTAAA
ATGTTCCCCTCTTTTTCCACCCCTCTTCTTTTTTCCTCCCCCTGGGGCTT
TCCTTACTTCCCAACATTCTTTCGTTTTCCTCTTTTGGTTTGGGCCTCTC
TTCCTTATCCCCTCCCTCTTTTTACCTCTCCCTTCCTTTCTCCCCGTTTC
GTGTTCCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_f18.b1 MSMg01no343_f18.b1 CHROMAT_FILE:
MSMg01no343_f18.b1 PHD_FILE: MSMg01no343_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:10 2005
         (437 letters)



>mm_chr5_36898839_36899675
          Length = 837

 Score =  816 bits (422), Expect = 0.0
 Identities = 430/433 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaattgtttttcctacgtgattggaagtacagatatacactcccacacttggctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gaattcaattgtttttcctacgtgattggaagtacagatatacactcccacacttggctt 578

                                                                       
Query: 65  atagcctacattttaattttcctgatgcttgttatgttttgtttgtgaacaaaggtattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atagcctacattttaattttcctgatgcttgttatgttttgtttgtgaacaaaggtattt 518

                                                                       
Query: 125 taggctgtaatcaattctaccttacccgtcttccttttatggcatgtgatttcttgttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 taggctgtaatcaattctaccttacccgtcttccttttatggcatgtgatttcttgttac 458

                                                                       
Query: 185 ctgtgtaggattgttgctgacttctggaagttttgttgttttgccattaccagtagatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctgtgtaggattgttgctgacttctggaagttttgttgttttgccattaccagtagatct 398

                                                                       
Query: 245 tcacatgcagtatgcagattttctttctccctgaacctttgagggaacccagttgactgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tcacatgcagtatgcagattttctttctccctgaacctttgagggaacccagttgactgt 338

                                                                       
Query: 305 gtcccgcccttactttctccttcactaacgccatggtattcttcagtcagccatgtgaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtcccgcccttactttctccttcactaacgccatggtattcttcagtcagccatgtgaga 278

                                                                       
Query: 365 gaccgggtaactgcctatgctctcctgcttgttcttctgtgacattaccttgncagcttt 424
           |||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 277 gaccggataactgcctgtgctctcctgcttgttcttctgtgacattaccttggcagcttt 218

                        
Query: 425 gctcctttgcatt 437
           |||||||||||||
Sbjct: 217 gctcctttgcatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_f18.g1 MSMg01no343_f18.g1 CHROMAT_FILE:
MSMg01no343_f18.g1 PHD_FILE: MSMg01no343_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:10 2005
         (384 letters)



>mm_chr5_36723992_36724775
          Length = 784

 Score =  704 bits (364), Expect = 0.0
 Identities = 379/384 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagaatccagagcttcgggtgtagacatcttggcaaccttgggaaatacagccatctt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagaatccagagcttcaggtgtagacatcttggcaaccttgggaaatacagccatctt 260

                                                                       
Query: 61  taacctaactctcacagagtgacctaggagacctttggaaagaaagcaaaacagagagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacctaactctcacagagtgacctaggagacctttggaaagaaagcaaaacagagagcc 320

                                                                       
Query: 121 agggtccagacagcttgagggacacaaactagtacttacatcagagtctctggagctaga 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggtccagacagcttgagggtcacaaactagtacttacatcagagtctctggagctaga 380

                                                                       
Query: 181 catgcctgaagctgaagccagtactgggtgatttcagtctctcccttcagctctctggaa 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 catgcctgaagctgaagccagtactgggtgaattcagtctctcccttcagctctctggaa 440

                                                                       
Query: 241 ctgggcttctgtgacccatgaccaagcgtcctggttttgtggcccacattgcagagcaca 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ctgggcttctgtgacccatgaccaagcatcctggttttgtggcccacattgcagagcaca 500

                                                                       
Query: 301 caagcagagaagggagtgagagcacccaaccttcacatagcttgaaagctaactgggaag 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 caagcagagaagggagtgagagcacccaaccctcacatagcttgaaagctaactgggaag 560

                                   
Query: 361 agttgtcggccagaacacagacaa 384
           ||||||||||||||||||||||||
Sbjct: 561 agttgtcggccagaacacagacaa 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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