BAC Information

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BAC

Clone NameMSMg01-343G08
Chromosome5 (Build37)
Map Location 31,669,901 - 31,670,313
singlet/doubletsinglet
Overlap genenone
Upstream geneOtof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Downstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343G08.T7 (MSMg01no343_g08.b1)MSMg01-343G08.TJ (MSMg01no343_g08.g1)
ACCAG456717AG456718
length769768
length of high quality
(start - end)
350 (62 - 411)402 (70 - 471)
definitionCHROMAT_FILE: MSMg01no343_g08.b1 PHD_FILE: MSMg01no343_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:13 2005CHROMAT_FILE: MSMg01no343_g08.g1 PHD_FILE: MSMg01no343_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CCATCCTTGCACTCTGATATTGGAGGTCTGTAAACAGAAGCCCCAGACTC
ACCCAGTGGAAAAATAGTCCTGCAGGCTGCAGAAGCAGCAATTGAGTAGT
GCACTACTGTCATCTAGGGGTCATGTTTAGTGTTGCACCCTAGGGTGGCT
CTTGAATATCTTGGAAGGGAGCCTTGTTAGACTGTTCCTGGGCCTTTCAT
TGGGAACAATTCAGTCAACTTCAATGGCTCCCAGAAAAAAGAAGTCTAGT
GTAGAGAAGCTGGGTGTCAAGGGGACTCTGAGATGAAGCTGACAAGGCTT
CCCACACCCTTTGGAAGGGGACAGAGCCTAGCAGTGGTGACAGTATCTAG
GTTCTCTGGGTCAGGCAGCACAGGTTTTGAGTCCTGAGACTGTCCCTTGT
CCCGTACTGGATCTTGTACAATGCTACTTTAGGCCTCTTCATTTATTTTA
TGACACATGGTCCTTCCTGTCTGATACAACATTGTATTCCTATTTTCGAA
TTCTTCTCGCTTTATTCCTTCTTTTTATTGTGCTTGTTTTCCCCTTTTCC
TTGGTACCGCCCTTCTTTTCCGTCCCCTCTTTTTTTTTCTTCTCCTTCTC
ATTTTCATCTCCTTCCTTTTTGACATTATCTCCACCCTTCTTACTCCTTA
TTTACTTCTTACTTTCCCCTTTTTTATCTACTTTTCTACCCTTCTTTTTC
CTTCTCTTCTTCCCCTCTN
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACTCCTTCACAGAGGCATACATGCAAGCAA
AATACCCATGCACATAAAATAAAAATAAATTAACACTTTAAAAAGAGTAT
TTTTTAAAACATGAGAAATTTATGTGGACTATTTGAATTCAAAATTCATG
GATCTAAATCATGAGAATATATTGGTTGAAGGGCTGTCACTAGGCAGATA
TTATGTTGGGAGCATCTTGAATATAAGGTTGCAGTTTTAGAGAACATAAA
TATAAACCTGTAGAATCTATATACATGCTGACACACACGTGATTCATAAA
TAGCAGTGGTTCTCAACCTTCCTAATGCTGCAACCCTTTAATCCAGTTCT
TCATGCTGTGGTGACCCCCAACCACATAATTATTTCTCATTATAATGTGA
ATAAACCCTGTTTTCTGATGACCTTTGGTGACCACTGTAAAATGGTCCTC
CCACCCCCAAGAATGTCATGACCCAAAAGGTTTCTTAACCTCTGTAGGAC
CTTTCTCATGACGTATGAGGCCCTTCGGTAACTTGTGTTTTACTTTCTCG
CCCCAAGTATTTCTACCCTCAATCTTCTTTATCTTTGTTATTCGTCTACT
TCTTACTCCGGTTCCCCTCTGCCCTTGTATTAACTTCCCACATTCTTCCT
TATTTCTTTTTTTTTAACGTCGCTCTTTTTATATAACCCATTCTCTCTCT
CTCTCAATATCTATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_g08.g1 MSMg01no343_g08.g1 CHROMAT_FILE:
MSMg01no343_g08.g1 PHD_FILE: MSMg01no343_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:13 2005
         (402 letters)



>mm_chr5_31669701_31670505
          Length = 805

 Score =  414 bits (214), Expect = e-120
 Identities = 361/414 (87%), Gaps = 14/414 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactccttcacagaggcatacatgcaagcaaaatacccatgcacataaaataaaaataaa 60
           |||||||||||| |||||||| ||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 201 aactccttcacacaggcatacgtgcaaacaatatacccatgcacataaaatgaaaataaa 260

                                                                       
Query: 61  ttaacactttaaaaagagtat-t-ttttaaaa-catgagaaatttatgtggactatttga 117
           | || |||||||||||||||| | ||||||||  ||||||| ||||||||| || |||| 
Sbjct: 261 tgaaaactttaaaaagagtatatattttaaaagaatgagaattttatgtgggctgtttgg 320

                                                                       
Query: 118 attcaaaattcatggatctaaatcatgagaatatattggttgaagggctgtcactaggca 177
           |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 321 attcaaaattcatggacctaaagcatgagactatattggttgaagggctgtcactaggca 380

                                                                       
Query: 178 gatattatgttgggagcatcttgaatataaggttgcagttttagagaacataaatataaa 237
            | ||| ||||||||||||||||| |||||| || ||||||||||||||| ||| |||||
Sbjct: 381 cacattctgttgggagcatcttgactataagttttcagttttagagaacacaaagataaa 440

                                                                       
Query: 238 cctgtagaatctatatacatgctga--ca-----cacac--gtgattcataaatagcagt 288
           |||||||||||| | ||||| ||||  ||     |||||  ||||||||| || | ||||
Sbjct: 441 cctgtagaatctgtgtacatactgaggcatacaacacacctgtgattcatgaagaacagt 500

                                                                       
Query: 289 ggttctcaaccttcctaatgctgcaaccctttaatccagttcttca-tgctgtggtgacc 347
           |||||||||||||||||||||| ||||||| ||||| ||||| ||  | |||||||||||
Sbjct: 501 ggttctcaaccttcctaatgctacaaccctctaatcaagttcctccct-ctgtggtgacc 559

                                                                 
Query: 348 cccaaccacataattatttctcattataatgtgaataaaccctgttttctgatg 401
           |||||||| | ||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct: 560 cccaaccataaaatgatttctcatcataatgtaaataaaccctgttttctgatg 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 805
Length adjustment: 9
Effective length of query: 393
Effective length of database: 796
Effective search space:   312828
Effective search space used:   312828
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)