BAC Information

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BAC

Clone NameMSMg01-343P04
Chromosome5 (Build37)
Map Location 85,477,372 - 85,477,752
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha5, LOC100039489
Downstream geneCenpc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343P04.T7 (MSMg01no343_p04.b1)MSMg01-343P04.TJ (MSMg01no343_p04.g1)
ACCAG457130AG457131
length832755
length of high quality
(start - end)		245 (35 - 279)382 (68 - 449)
definitionCHROMAT_FILE: MSMg01no343_p04.b1 PHD_FILE: MSMg01no343_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:59 2005CHROMAT_FILE: MSMg01no343_p04.g1 PHD_FILE: MSMg01no343_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCCATG
GATTTGTCGGCTCTGCTATGTGTTGAGAGTTCAGGTGTTCTTGTACCAGT
TATTCAAGGACCTGTAATTTTTGTTGTTGCTGTTGTTGTTGTTGTTGCTG
TTGTTATGGGTCACTGCTCTTACCATTAAGGTCTGCCTGATATCCATTTT
AGGAGGCAAGAGTATTGGTATGTCAGCAGTGGCCCCTTTTATATAATTGA
AAAATCAGTCCCTGTGATGTCCTATTTGAACAATGATCACAGCTTGCCAT
TGTTCTTGATCTCTTATATCAGTTCCTTTCCCAGGAACATTTACCACATC
ACTTGCTTTTTTATTTTTTAATTTACCGTCCCCAGCACTGCCCGATTATT
AATTTTTTTTCCCCCCCCCTCATCTTATAATATCCCTTCCCTCATGCATT
GTAGTCCTATGTTCTTTTCTTTTATCACCTCTCTTTATTTTCTTTCTCCT
TATTCTCTTCTCTTACTTATTCTTTTCTTCCCTCCCCTATTTACCACTTA
AACTCCTTTCCTTTAATCCTTTCCCTCTTCTTTCCTGCTATCTTACCCCT
GCTCATTTTTTTTTTTCTCTTTCTTTTTTTTATTCCCTCCTTAATCTTAT
TATCATACTCTACTACGCTACTTCTCTTCTCCTTCTCTATATTTCTCATT
CTGCTTTTCTCACCTCCTTTAATTTATTCCCCTTTCCTTTCTCTACTTCT
ATTCTCACCTTTATTTATCCTCTTCCCCTCCCTCTCATACTCCTCACCTC
CNCACTTCCGTTCTCTCCTCCCTTCTTATATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTAACGTGAGCACTCAGCAGACATTGTTAATC
TTAAAAACATGGTTTATTTCAGTTCCTTGAAATGATGTACTTCTCTGGTA
ATTTCTCTTCTATTTTATTTGTTTACTCTCACAGGAACCTCCTCTTATTA
AAATGCTGCACTGGCTAGATTAATCCTGTGGGCTTTATTTATTTATTTTT
ACTTTTCTCTCATTTATAACAACACGTTAAAATGGTTACTCCGCTTTATT
TCTAAAGGCTGATTTTCTTCTGTTTGTGCTCTTTAAATTTTTTAAAATAT
ACTCTATTTTTTTTGGCATTTGGATCAGCTGTTTATATGTTGGGTCAGAT
AATTAACATAAACAAATATACTTAATATTTTGTAAATGAATTTTTCGAAG
CAGATAATTATTAAACATGCATCCAAGCTATTGATATTTCTCAACTAATT
GAAGCTTCCAGCAACCTTTTGTTATATTTTTAAACTAAACATTATTTTGT
TACTTTGTATAATTAATTAATGTACTACTCTCATTGTTCTATTCTTGTCG
CCCTCTCTTTTACTTTATTTTATCCCCGTTATTTACATCCTTTTATCTCC
TCTTTTCCCTTTTCACCTTATTCTTTTCCACACCCTTTATTTATCTTTAA
TACCCCATTTCCTTTTATATTTTTTTTCCTAACCTTTTTTTATTCTCTTT
TTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_p04.g1 MSMg01no343_p04.g1 CHROMAT_FILE:
MSMg01no343_p04.g1 PHD_FILE: MSMg01no343_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:59 2005
         (382 letters)



>mm_chr5_85476974_85477754
          Length = 781

 Score =  700 bits (362), Expect = 0.0
 Identities = 377/382 (98%), Gaps = 1/382 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaacgtgagcactcagcagacattgttaatcttaaaaacatggtttatttcagttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 attaacgtgagcactcagcagacattgttaatcttaaaaacatggtttatttcagttcct 720

                                                                       
Query: 61  tgaaatgatgtacttctctggtaatttctcttctattttatttgtttactctcacaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tgaaatgatgtacttctctggtaatttctcttctattttatttgtttactctcacaggaa 660

                                                                       
Query: 121 cctcctcttattaaaatgctgcactggctagattaatcctgtgggctttatttatttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cctcctcttattaaaatgctgcactggctagattaatcctgtgggctttatttatttatt 600

                                                                       
Query: 181 tttacttttctctcatttataacaacacgttaaaatggttactccgctttatttctaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tttacttttctctcatttataacaacacgttaaaatggttactccgctttatttctaaag 540

                                                                       
Query: 241 gctgattttcttctgtttgtgctctttaaattttttaaaatatactctattttttttggc 300
           ||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||
Sbjct: 539 gctgattttcttctgtttgtgctctttaaattttttttaatatactctattttttt-ggc 481

                                                                       
Query: 301 atttggatcagctgtttatatgttgggtcagataattaacataaacaaatatacttaata 360
           ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 480 atttggatcagttgtttatatgttgggtcagataattaacataaataaatatacttaata 421

                                 
Query: 361 ttttgtaaatgaatttttcgaa 382
           ||||||||||||||||||||||
Sbjct: 420 ttttgtaaatgaatttttcgaa 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 781
Length adjustment: 9
Effective length of query: 373
Effective length of database: 772
Effective search space:   287956
Effective search space used:   287956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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