Query= MSMg01no344_e07.b1 MSMg01no344_e07.b1 CHROMAT_FILE:
MSMg01no344_e07.b1 PHD_FILE: MSMg01no344_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:24 2005
(564 letters)
>mm_chr5_49415528_49416493
Length = 966
Score = 839 bits (434), Expect = 0.0
Identities = 505/562 (89%), Gaps = 52/562 (9%)
Strand = Plus / Minus
Query: 5 gaattcctgcatatgatcttcccttccccttttctcttctctaagctatgacacaggaga 64
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 545 gaattcctgcagatgatcttcccttccccttttctcttctctaaggtatgacacaggaga 486
Query: 65 aaagtggacttgtgccatttaaataaaataaaaataacttttatacttctacttttatct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaagtggacttgtgccatttaaataaaataaaaataacttttatacttctacttttatct 426
Query: 125 ccaacatgtatcttataaattgatgatcaccagagttgaaaatcttaacaa--ttttttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 425 ccaacatgtatcttataaattgatgatcaccagagttgaaaatcttaacaattttttttt 366
Query: 183 ctatttcttctttcatcattataccacatcttttgaagatcttcatttccttttgaacac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctatttcttctttcatcattataccacatcttttgaagatcttcatttccttttga---- 310
Query: 243 acacacacacacacacacacacgcacatgcacacgcacacgcacacacacacacacacac 302
||||||||||||||
Sbjct: 309 ----------------------------------------------acacacacacacac 296
Query: 303 acacacacacacacacacacacacacactttatcaagggaaatctaaaatttcctataga 362
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 295 acacacacacacacacacatacacatactttatcaagggaaatctaaaatttcctataga 236
Query: 363 tgatgaacagcaattcctctagtctcttcttctctgtgccttacaagcatcccccacata 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cgatgaacagcaattcctctagtctcttcttctctgtgccttacaagcatcccccacata 176
Query: 423 tttaagtagactttgaacatggatctctgtgtctattctctttctgcctctatgtacaga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tttaagtagactttgaacatggatctctgtgtctattctctttctgcctctatgtacaga 116
Query: 483 gataatctagagatcctagtccctgacaccagaataggaagtgttacgtttccagtgcaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gataatctagagatcctagtccctgacaccagaataggaagtgttacgtttccagtgcaa 56
Query: 543 acatgccaagtgcagtaaatac 564
||||||||||||||||||||||
Sbjct: 55 acatgccaagtgcagtaaatac 34
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 966
Length adjustment: 10
Effective length of query: 554
Effective length of database: 956
Effective search space: 529624
Effective search space used: 529624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_e07.g1 MSMg01no344_e07.g1 CHROMAT_FILE:
MSMg01no344_e07.g1 PHD_FILE: MSMg01no344_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:24 2005
(428 letters)
>mm_chr5_49248580_49249407
Length = 828
Score = 801 bits (414), Expect = 0.0
Identities = 420/422 (99%)
Strand = Plus / Plus
Query: 1 atattggtggtagttaattatttgatttaatatataaaatataagacatgtagaagggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattggtggtagttaattatttgatttaatatataaaatataagacatgtagaagggtt 260
Query: 61 tcttgggacttattcaccaatggaatagattattattttcttttctacagcagtgacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgggacttattcaccaatggaatagattattattttcttttctacagcagtgacaga 320
Query: 121 cacattatgatcagagagtgtcaaagatggactagagaccctgagattggaaagaataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacattatgatcagagagtgtcaaagatggactagagaccctgagattggaaagaataga 380
Query: 181 cttttctctctctaaatgttgatcttgcagtccggacaaatcaaagatgcctgatagtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttctctctctaaatgttgatcttgcagtccggacaaatcaaagatgcctgatagtaa 440
Query: 241 gccaaagtaattgacacacgattttgagttttgggatatggcatttcagaaagtggcatt 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccaaagtaattgacacacaattttgagttttgggatatggcatttcagaaagtggcatt 500
Query: 301 actcacataatagacttctctgccttattatcatgtactgtttatgattctgaggttacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcacataatagacttctctgccttattatcatgtactgtttatgattctgaggttacc 560
Query: 361 aatgattataaatgcttcttggaaacaatctaacattatctaaaagaccaaagaagtcaa 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 aatgattataaatgcttcttggaaacaatcttacattatctaaaagaccaaagaagtcaa 620
Query: 421 aa 422
||
Sbjct: 621 aa 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
