Query= MSMg01no344_g12.b1 MSMg01no344_g12.b1 CHROMAT_FILE:
MSMg01no344_g12.b1 PHD_FILE: MSMg01no344_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:34 2005
(519 letters)
>mm_chr5_54836522_54837440
Length = 919
Score = 942 bits (487), Expect = 0.0
Identities = 508/515 (98%), Gaps = 1/515 (0%)
Strand = Plus / Plus
Query: 5 gaattcttccaatctccgggtactcattacctttcaaagaagtcatttcatttccatgta 64
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttccaaccacggggtactcattacctttcaaagaagtcatttcatttccatgta 265
Query: 65 gcttaagctgaagaaaattatttatcatgctgagaagaaataacccattgatttttggcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcttaagctgaagaaaattatttatcatgctgagaagaaataacccattgatttttggcc 325
Query: 125 tgtttccactgcatagaaaaaaacatatgcagtcctgttttgttttattttattttattt 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtttccactgcatagaaaaaa-catatgcagtcctgttttgttttattttattttattt 384
Query: 185 ttgagaggaaaagacaaatttgaagacagctatcctcttgtctgctgccttcttccttca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgagaggaaaagacaaatttgaagacagctatcctcttgtctgctgccttcttccttca 444
Query: 245 ggctaaatatccccaatggcacctgtgttaatgtgacatgatttcgaatctagccattct 304
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 ggctaaatatccccaatggcacctgtgttaatgtgacatgatttcaaatctagccattct 504
Query: 305 ataattcattgctttgggggcattacggttagctgataattatcattgtaataaaagctg 364
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 ataattcattgctttgggggaattatggttagctgataattatcattgtaataaaagctg 564
Query: 365 ccacatcgaacatttactatgtaccaggtgtcttacaaacaccacatttaatatccaaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccacatcgaacatttactatgtaccaggtgtcttacaaacaccacatttaatatccaaaa 624
Query: 425 ttatcttggttacatgatgtctttggtattttatagacagaatacaaaggtctttgtgtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttatcttggttacatgatgtctttggtattttatagacagaatacaaaggtctttgtgtt 684
Query: 485 gaatgaataagattgaatgaatagctacatcaaag 519
|||||||||||||||||||||||||||||||||||
Sbjct: 685 gaatgaataagattgaatgaatagctacatcaaag 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_g12.g1 MSMg01no344_g12.g1 CHROMAT_FILE:
MSMg01no344_g12.g1 PHD_FILE: MSMg01no344_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:35 2005
(572 letters)
>mm_chr5_55034131_55035102
Length = 972
Score = 1029 bits (532), Expect = 0.0
Identities = 565/582 (97%), Gaps = 12/582 (2%)
Strand = Plus / Minus
Query: 1 atgttttagattattcagaatattgtttgatatcagtgtttaaaatctcttaaataattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 atgttttagattattcagaatattgtttgatatcagtgtttaaaatctcttaaataattc 841
Query: 61 aaccacagtatggccacagcattgctttttctgttcatcagataatattttgttttgtg- 119
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 840 aaccacagtatggccacaggattgctttttctgttcatcagataatattttgttttgtgg 781
Query: 120 ---------gtggttatttgtactaattattcaagctgctctttacatattttctatgct 170
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 780 tggttatttgtggttatttgtattaattattcaagctgctctttacatattttctatgct 721
Query: 171 cataaataaaacctagctgtgggattggcatatcatcatatgtacatcattttcctccag 230
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 720 cataaataaaacctagctgtgggattggcatatcatcatgtgtacatcattttcctccag 661
Query: 231 tacacactgaaactatgttctgacaaatcttactagttctcga-aactgacaaatggaca 289
||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct: 660 tacacactgaaactatgttctgacaaatcttactagttctc-acaactgacaaagggaca 602
Query: 290 gactgagttccagctgtttcactttctgaaaacagctcttctttttatactgttttccat 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gactgagttccagctgtttcactttctgaaaacagctcttctttttatactgttttccat 542
Query: 350 tttggttgttgtacactactattgttttgtgatataaatgtcctttcctgcagtggatat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttggttgttgtacactactattgttttgtgatataaatgtcctttcctgcagtggatat 482
Query: 410 tgacacaaactctcacccatgttccaccatgatcctttgattgactttcagaaaaatgtg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgacacaaactctcacccatgttccaccatgatcctttgattgactttcagaaaaatgtg 422
Query: 470 cattcacatatacaataaaacgttattagtgaacctaattctttaactgctgatttctta 529
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cattcacatatacaataaaactttattagtgaacctaattctttaactgctgatttctta 362
Query: 530 cagcttttcatacattctggttataaccatgggtgtttgttc 571
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cagcttttcatacattctggttataaccatgggtgtttgttc 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
