BAC Information

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BAC

Clone NameMSMg01-345I08
Chromosome5 (Build37)
Map Location 132,434,784 - 132,561,301
singlet/doubletdoublet
Overlap geneAuts2
Upstream geneWbscr17, 4930563F08Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345I08.T7 (MSMg01no345_i08.b1)MSMg01-345I08.TJ (MSMg01no345_i08.g1)
ACCAG458325AG458326
length771746
length of high quality
(start - end)		511 (54 - 564)557 (89 - 645)
definitionCHROMAT_FILE: MSMg01no345_i08.b1 PHD_FILE: MSMg01no345_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:59 2005CHROMAT_FILE: MSMg01no345_i08.g1 PHD_FILE: MSMg01no345_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,560,795 - 132,561,301)(132,434,784 - 132,435,340)
sequence
NTTAATTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATCTATTTGTGCTTTTCTATAAAGACCTAATTCATGA
GGAGTAGGTATTGGTGGCAGGGCAGAGCCTTTTTTATATACATTGGCTCT
GAAAAGTAATTCAGTAACCAGAAAATCGTAAATGTCCCAAAAACCTCATT
ACGTAAGCAAGATCAGAAAATATAAGACACTGACCTCAAAAGGAATAATT
AAGGTTATGAAACTAAATTTATTTCCCCTTCACCAGCTGAGAAAGTACAT
TTTCATGAGATGGCTGGTTGACAATAACTTCTTGGTGAGATTTGGTGGTG
AAGAGTATTTTGTTGAACTTATTTCATTTTATATTTACATTTTTGTTGAT
GCAGAGTCTCTTGACGTTGCTCAGTGTGACCTAGAATTCTTGATCCTCCT
GCCTCAATCCTTTGTGCACTCAACTACAGACATCACTGCAGTGCTTTGAC
TGTTTTATAAACTAGGGTGGCTACTTTTTGTAGGTAGAATCATAAGGTGT
CTGATAACTCTGAANATTGGTTTTTGTAAATAGAAATCTGAATTTAGTTA
ATGCAGTGGTCAGTATATAGAAAAAAGAACCCTCTTGACTGATGTCGACT
TTAGACCGTGTTGAAAATTGGTTAAAATTAAAAGCCGTTGTGGGTTCTTA
ACGAAGAACACAAATTTCATTTTTCCTAACCCCAAATAAATAATGTCTTC
CAAAATGGCTGGAAAGACCCC

NNNNCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCAAGGGAGTCT
AGTAAGTACACATTTCCTTCTCTGGTCCTTGTAGATAAGAAAAGTAGGCT
AGGAACGAAAATTATGTTCCATTCAACCATGAGCACCAGACTGTAGCTGT
CTTCCAAACTTCTCAGTTATTTTTTTTTCACCATTTTGCCTAGATCATCA
TTAATTTCCAGGTCAGTGCACTGAGAGAGAATGCAGATAGCAGAAAATCC
TGAGTTACTTGAGCCCTTGGCTAATATAAACATACATCTAGGAATGCTGA
AGAGACAAACAATACAAAACTATCTTCCATCTACTTGTTTTTCTCCCTTT
GTCTTATTTTAAGTGCCAAGGCAGTATTTTTCCTTATTAATAAAAGCTAC
CATGGCAAATAAAACTCCAGATTAATATGTCCAAACAGTGTTGGAAACAA
TAAAAAGAAATATAAGCAAATTTAAAAGAAAGAAAATAAAAAGAAAACTA
GCCATGAAAGGTAATTTACAGAAAAAAATGAAATCTCATAACTTGGTACC
TGTGACTCTTACGTAACTAATGGTTTCAGATACACAGCCGAGTGTGGACT
CTACCAAGGCTTTTTGCTAAAGGACAGATGCTTGCTGGGAGTCATACATG
ATTAGGGGTCATCGCATACCTGTGGTAGTAGAAAAGTGACCATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_i08.b1 MSMg01no345_i08.b1 CHROMAT_FILE:
MSMg01no345_i08.b1 PHD_FILE: MSMg01no345_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:59 2005
         (511 letters)



>mm_chr5_132560765_132561675
          Length = 911

 Score =  957 bits (495), Expect = 0.0
 Identities = 504/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctatttgtgcttttctataaagacctaattcatgaggagtaggtattggtgg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gaattcatctatttgtggttttctataaagacctaattcatgaggagtaggtattggtgg 478

                                                                       
Query: 65  cagggcagagccttttttatatacattggctctgaaaagtaattcagtaaccagaaaatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cagggcagagccttttttatatacattggctctgaaaagtaattcagtaaccagaaaatc 418

                                                                       
Query: 125 gtaaatgtcccaaaaacctcattacgtaagcaagatcagaaaatataagacactgacctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtaaatgtcccaaaaacctcattacgtaagcaagatcagaaaatataagacactgacctc 358

                                                                       
Query: 185 aaaaggaataattaaggttatgaaactaaatttatttccccttcaccagctgagaaagta 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 357 aaaaggaataattaaggttatgaagctaaatttatttccccttcaccagctgagaaagta 298

                                                                       
Query: 245 cattttcatgagatggctggttgacaataacttcttggtgagatttggtggtgaagagta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cattttcatgagatggctggttgacaataacttcttggtgagatttggtggtgaagagta 238

                                                                       
Query: 305 ttttgttgaacttatttcattttatatttacatttttgttgatgcagagtctcttgacgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttttgttgaacttatttcattttatatttacatttttgttgatgcagagtctcttgacgt 178

                                                                       
Query: 365 tgctcagtgtgacctagaattcttgatcctcctgcctcaatcctttgtgcactcaactac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tgctcagtgtgacctagaattcttgatcctcctgcctcaatcctttgtgcactcaactac 118

                                                                       
Query: 425 agacatcactgcagtgctttgactgttttataaactagggtggctactttttgtaggtag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 117 agacatcactgcagtgctttgactgttttataaactagggtggctactttttgcaggtag 58

                                      
Query: 485 aatcataaggtgtctgataactctgaa 511
           |||||||||||||||||||||||||||
Sbjct: 57  aatcataaggtgtctgataactctgaa 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no345_i08.g1 MSMg01no345_i08.g1 CHROMAT_FILE:
MSMg01no345_i08.g1 PHD_FILE: MSMg01no345_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:59 2005
         (557 letters)



>mm_chr5_132434584_132435540
          Length = 957

 Score = 1077 bits (557), Expect = 0.0
 Identities = 557/557 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaagggagtctagtaagtacacatttccttctctggtccttgtagataagaaaagtagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaagggagtctagtaagtacacatttccttctctggtccttgtagataagaaaagtagg 260

                                                                       
Query: 61  ctaggaacgaaaattatgttccattcaaccatgagcaccagactgtagctgtcttccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaggaacgaaaattatgttccattcaaccatgagcaccagactgtagctgtcttccaaa 320

                                                                       
Query: 121 cttctcagttatttttttttcaccattttgcctagatcatcattaatttccaggtcagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctcagttatttttttttcaccattttgcctagatcatcattaatttccaggtcagtg 380

                                                                       
Query: 181 cactgagagagaatgcagatagcagaaaatcctgagttacttgagcccttggctaatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgagagagaatgcagatagcagaaaatcctgagttacttgagcccttggctaatata 440

                                                                       
Query: 241 aacatacatctaggaatgctgaagagacaaacaatacaaaactatcttccatctacttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacatacatctaggaatgctgaagagacaaacaatacaaaactatcttccatctacttgt 500

                                                                       
Query: 301 ttttctccctttgtcttattttaagtgccaaggcagtatttttccttattaataaaagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttctccctttgtcttattttaagtgccaaggcagtatttttccttattaataaaagct 560

                                                                       
Query: 361 accatggcaaataaaactccagattaatatgtccaaacagtgttggaaacaataaaaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accatggcaaataaaactccagattaatatgtccaaacagtgttggaaacaataaaaaga 620

                                                                       
Query: 421 aatataagcaaatttaaaagaaagaaaataaaaagaaaactagccatgaaaggtaattta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatataagcaaatttaaaagaaagaaaataaaaagaaaactagccatgaaaggtaattta 680

                                                                       
Query: 481 cagaaaaaaatgaaatctcataacttggtacctgtgactcttacgtaactaatggtttca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaaaaaaatgaaatctcataacttggtacctgtgactcttacgtaactaatggtttca 740

                            
Query: 541 gatacacagccgagtgt 557
           |||||||||||||||||
Sbjct: 741 gatacacagccgagtgt 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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