Query= MSMg01no345_j06.b1 MSMg01no345_j06.b1 CHROMAT_FILE:
MSMg01no345_j06.b1 PHD_FILE: MSMg01no345_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:03 2005
(488 letters)
>mm_chr5_101228799_101229686
Length = 888
Score = 880 bits (455), Expect = 0.0
Identities = 477/488 (97%), Gaps = 6/488 (1%)
Strand = Plus / Plus
Query: 1 tcttcttcatagatattaaatataaggatgcatgatttgataatatctaaatatagcttc 60
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 201 tcttcttcatagatattaaatataaggatacatgatttgagaatatctaaatatagcttc 260
Query: 61 ggtgggtaggataattgtaggtaatagaaatctgacaggctaccttgataaaagatccaa 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ggtgggtaggataattgtaggtaatagaaacctgacaggctaccttgataaaagatccaa 320
Query: 121 attcaagttttacagtaagacattcaactagttgcttcttaactataggtgtatttttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcaagttttacagtaagacattcaactagttgcttcttaactataggtgtatttttat 380
Query: 181 gggtttcaagtgtgaacagggatgtgggagcctaatcacagcacacgagaatttagctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtttcaagtgtgaacagggatgtgggagcctaatcacagcacacgagaatttagctgg 440
Query: 241 agctgagaaggaatacagcttatattcaaggcaagctagatatggtggtatacacgtact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctgagaaggaatacagcttatattcaaggcaagctagatatggtggtatacacgtact 500
Query: 301 gtgacagcacttaggaagctctgaggcaagaggagcttgtgagttggatacatcctggac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgacagcacttaggaagctctgaggcaagaggagcttgtgagttggatacatcctggac 560
Query: 361 tacaacaacaacaaaaccaatcactgttgtgtcttttggctaaaatcaagtgtaaaaacc 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacaacaa------aaccaatcactgttgtgtcttttggctaaaatcaagtgtaaaaacc 614
Query: 421 caaaatcttnaaagattatgttagataccaaagcagttgtctaaacacatgcgactcccc 480
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 615 caaaatcttaaaagattatgttagataccaaagcagttgtctaaacacatgcgactccac 674
Query: 481 cttagtca 488
||||||||
Sbjct: 675 cttagtca 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_j06.g1 MSMg01no345_j06.g1 CHROMAT_FILE:
MSMg01no345_j06.g1 PHD_FILE: MSMg01no345_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:03 2005
(234 letters)
>mm_chr5_101400957_101401590
Length = 634
Score = 369 bits (191), Expect = e-107
Identities = 215/223 (96%), Gaps = 2/223 (0%)
Strand = Plus / Minus
Query: 1 tttgtcttagatttcctataagtcatccttattggaagctattattatggaattagtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tttgtcttagatttcctataagtcatccttattggaagctattattatggaattagtaat 363
Query: 61 tagaggggccgggattatgctaccttagtttttcatgttttgggtggtcttatcttagaa 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 362 tagaggggccgggattatgctaccctagtttttcatgttttgggtggtcttatcttagaa 303
Query: 121 tttgtgattctgcagttaaaacattggttgggttttttaaccgtttcattttt-cagtgg 179
|||||||||||||| ||||| ||||||||||||||||||| | ||| |||||| ||||||
Sbjct: 302 tttgtgattctgcaattaaatcattggttgggttttttaaacattttattttttcagtgg 243
Query: 180 ataagtcttcaatgttaaagatgaatgagctgagggggggggt 222
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 242 ataagtcttcaatgttaaagatgaatgagctg-gggggggggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
