Query= MSMg01no345_l13.b1 MSMg01no345_l13.b1 CHROMAT_FILE:
MSMg01no345_l13.b1 PHD_FILE: MSMg01no345_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:14 2005
(121 letters)
>mm_chr5_55311230_55311748
Length = 519
Score = 203 bits (105), Expect = 3e-57
Identities = 114/117 (97%), Gaps = 2/117 (1%)
Strand = Plus / Minus
Query: 5 gaattcagcagtgtcctcgcagatttctgtcatgtttctgtttgctgtttcccttgcatt 64
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 319 gaattcagcagtgtcct-gcagatttctgtcatgtttctgtttcctgtttcccttgcatt 261
Query: 65 tagtgtgttatgaaggttcaccatctacaagattagcttttttttaatgctaatggt 121
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 260 tagtgtgttatgaaggttcaccatctacaagattagc-tttttttaatgctaatggt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 519
Length adjustment: 8
Effective length of query: 113
Effective length of database: 511
Effective search space: 57743
Effective search space used: 57743
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no345_l13.g1 MSMg01no345_l13.g1 CHROMAT_FILE:
MSMg01no345_l13.g1 PHD_FILE: MSMg01no345_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:14 2005
(639 letters)
>mm_chr5_55133651_55134689
Length = 1039
Score = 1180 bits (610), Expect = 0.0
Identities = 633/644 (98%), Gaps = 7/644 (1%)
Strand = Plus / Plus
Query: 3 ggacagacagaagcgttgtctgcagttacttatccactgctaaaagcactagtctccgag 62
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ggacagacagaggcgttgtctgcagttacttatccactgctaaaagcactagtctccgag 255
Query: 63 agatagctcacacagacagaagcaaaaagcaaagagaagacatcaacttgagaaagtgct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agatagctcacacagacagaagcaaaaagcaaagagaagacatcaacttgagaaagtgct 315
Query: 123 ttttagatagaaggttggatagacaggcataatagagattgaaagaaggtaggtgtgagt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttttagatagaaggttggatagacaggcataatagagattgaaagaaggtaggtgtgagt 375
Query: 183 ggtcagtattcattatgtaccagagcgacacttgtcaaatttaatttacctgaaattggt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggtcagtattcattatgtaccagagcgacacttgtcaaatttaatttacctgaaattggt 435
Query: 243 ggaaaattaattgtgtttatggccacaaataacctatctgaaaagcaataatgataacta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggaaaattaattgtgtttatggccacaaataacctatctgaaaagcaataatgataacta 495
Query: 303 tgcatttctc--gagggataaatttagtcaatgaaatg-----cacagcttataaagtga 355
|||||||||| |||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 496 tgcatttctcaagagggataaatttagtcaatgaaatgaaatgcacagcttataaactga 555
Query: 356 aaaatggaaaacattgatgaaagaaattaaaccagtaaccttgtaaggcaggtggcagaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaaatggaaaacattgatgaaagaaattaaaccagtaaccttgtaaggcaggtggcagaa 615
Query: 416 caactgtgctaagaaagtagagcatacacactgactgtagaaaagttgaagattggggag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 caactgtgctaagaaagtagagcatacacactgactgtagaaaagttgaagattggggag 675
Query: 476 agaaggagatagataaactgaggatgtataaagatatcatagggcaacccagtatttatt 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 676 agaaggagatagataaactgaggatgtataaagatatcatagggcaacccagtacttatt 735
Query: 536 agctaactaaaagcggaagtacccagagaaaacagtattggaatggaggtactgtggttc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agctaactaaaagcggaagtacccagagaaaacagtattggaatggaggtactgtggttc 795
Query: 596 aggggataatctgtctccagaaaactataggttattagacaaaa 639
||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 796 aggggataatccgtctccagaaaactataggttattagacaaaa 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|