XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGG
TCTATACCTAAACATAATAAAAGCAATCTACAGCAAACCAGTAGCCAATA
TCAAACTAAATGGAGAAAACTCAAAGCAATCCCACTAAAATCAGGGACTA
GACAAGGATACCCACTTTCTCCCTACCTATTCAATATCATACTTGAAGTT
CTATCCAGAGCAATTCAACAACAAAAGGATATCAAGGGGACACAAGTTGG
AAAGGAAGAAGTCAAAATATTACTATTTGCAGATAATATGATAGTATATA
TACGTGACCCCAAAAATTCCACCAGAGAACTCCTAAACCTGATAGACAGC
TTCAGTGCAGTAGCTGGATATAAAATCAACTGAAATAAATCAATGGCCTT
TCTCTACACAAATGATAAATGGACTGAGAAAGAAATTAGGGAAATAACAC
CCTTCACAATAGTCACAAATAATATAAAATACCTGGTGTGACTCTAACTA
AGGAAGTGGAAGATCTGCATGACAAGAATTTCAAGTCTCTGAAGGAAGAA
ATTGAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGG
CAGGAGTAATGTAGTAGAAATGGCTATCCTGCCTAAAGCAATCTACAGAT
TTAATGCAATCCCCATCAAAATCCCAACTCAGTTCTTTACTGAAATAGAA
AGGGTAATTTGCCAATTCACCTGGAAAATAAN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAACACTGGAGGTATGGAGACAGCTCAGCTTCTCCTA
CAGTAATTTAATTTGTGGGAAGAAAATTATGATGTGTAATGTCTTGCCTT
TAGTCTCAATAGTCTGAAATATTTAGAAAGTAACAAGTGATGTTGCAAAA
CTGGCATGAATAAGGCAGTTTACCCATTTTCCTAATTACATAACTGGATG
CACCAGGATATTTTACTTATGAGTGGAGTAGAACAAATTATTTTTATTAA
AGTTCAATAATTTTCCTGGCAGTGGTGGCACACGCCTTTAATCCCAGCAC
TTGGGAAGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTA
CAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAAAAACCCTGTCTCAA
AAAACCAAAAATAAATAAATACATAAAAAAAATACTGCCACATAATGAAT
AGATTTTGAAGTGAGTACTGTGACATGTGACTTTGCCTGTCTTTCAGGCG
GAGTTACTTTGGAAGCTCTGGATCTGTTCACTGAAGAGAGGCATTCAGTT
CAAATTTCAAAGAGAAAGTGACCTACTTTGTATTTGATAGTGTGTCAGGA
TTCTTACAGATTTACTCCNAAAAGTATTTCACTTAACATTGGAACACATT
TGGTCTGCACTGGCAAAGATAACTTTGAATTTN

Query= MSMg01no346_d09.g1 MSMg01no346_d09.g1 CHROMAT_FILE:
MSMg01no346_d09.g1 PHD_FILE: MSMg01no346_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:51 2005
         (578 letters)



>mm_chr5_55311349_55312325
          Length = 977

 Score = 1094 bits (566), Expect = 0.0
 Identities = 575/578 (99%), Gaps = 1/578 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacactggaggtatggagacagctcagcttctcctacagtaatttaatttgtgggaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacactggaggtatggagacagctcagcttctcctacagtaatttaatttgtgggaagaa 260

                                                                       
Query: 61  aattatgatgtgtaatgtcttgcctttagtctcaatagtctgaaatatttagaaagtaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aattatgatgtgtaatgtcttgcctttagtctcaatagtctgaaatatttagaaaataac 320

                                                                       
Query: 121 aagtgatgttgcaaaactggcatgaataaggcagtttacccattttcctaattacataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgatgttgcaaaactggcatgaataaggcagtttacccattttcctaattacataac 380

                                                                       
Query: 181 tggatgcaccaggatattttacttatgagtggagtagaacaaattatttttattaaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggatgcaccaggatattttacttatgagtggagtagaacaaattatttttattaaagtt 440

                                                                       
Query: 241 caataattttcctggcagtggtggcacacgcctttaatcccagcacttgggaagcagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caataattttcctggcagtggtggcacacgcctttaatcccagcacttgggaagcagagg 500

                                                                       
Query: 301 caggtggatttctgagttcgaggccagcctggtctacagagtgagttccaggacagccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggtggatttctgagttcgaggccagcctggtctacagagtgagttccaggacagccag 560

                                                                       
Query: 361 agctacacagaaaaaccctgtctcaaaaaaccaaaaataaataaatacataaaaaaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 agctacacagaaaaaccctgtctcaaaaaaccaaaaataaataaatacataaaaaaatta 620

                                                                       
Query: 421 ctgccacataatgaatagattttgaagtgagtactgtgacatgtgactttgcctgtcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgccacataatgaatagattttgaagtgagtactgtgacatgtgactttgcctgtcttt 680

                                                                       
Query: 481 caggcggagttactttggaagctctggatctgttcactgaagagaggcattcagttcaaa 540
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caggcg-agttactttggaagctctggatctgttcactgaagagaggcattcagttcaaa 739

                                                 
Query: 541 tttcaaagagaaagtgacctactttgtatttgatagtg 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tttcaaagagaaagtgacctactttgtatttgatagtg 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 977
Length adjustment: 10
Effective length of query: 568
Effective length of database: 967
Effective search space:   549256
Effective search space used:   549256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)