Query= MSMg01no346_g18.b1 MSMg01no346_g18.b1 CHROMAT_FILE:
MSMg01no346_g18.b1 PHD_FILE: MSMg01no346_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:06 2005
(499 letters)
>mm_chr5_57402657_57403555
Length = 899
Score = 938 bits (485), Expect = 0.0
Identities = 496/501 (99%), Gaps = 4/501 (0%)
Strand = Plus / Minus
Query: 1 tgaaaaacctgacaccagaagagtttaatattcagtttattagtaaataagattttctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tgaaaaacctgacaccagaagagtttaatattcagtttattagtaaataagattttctat 640
Query: 61 gaacccccagccacatagaccttgggtcagcacactgaaggcatctcctatgagtctggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gaacccccagccacatagaccttgggtcagcacactgaaggcatctcctatgagtctggc 580
Query: 121 ctttggctgttgccctcctaacatattgcagtactctctttctctcattttcttggcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ctttggctgttgccctcctaacatattgcagtactctctttctctcattttcttggcctc 520
Query: 181 --aatcaatagaatagaaaaataacttaccatctttaatataaaaaatgcagcttcctta 238
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gta--caatagaatagaaaaataacttaccatctttaatataaaaaatgcagcttcctta 462
Query: 239 agccctcctgtgtaaactgcaatgtttatcatgcttaatttcagaatcctcagaagtgct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agccctcctgtgtaaactgcaatgtttatcatgcttaatttcagaatcctcagaagtgct 402
Query: 299 aaatattctcttgattttagaagcacaaagagatgtttcctttgaatctatatcatgggg 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 taatattctcttgattttagaagcacaaagagatgtttcctttgaatctatatcatgggg 342
Query: 359 acactcacattaatatattatgagcaaaactctatgaaaaacctgacacaagaagaattt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 acactcacattaatatattatgagcaaaactctatgaaaaacctgacacaagaagaattt 282
Query: 419 aacattcgccttactagtaaataagattttccctgatacctcagccatttagatcttgaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aacattcgccttactagtaaataagattttccctgatacctcagccatttagatcttgaa 222
Query: 479 ctaaaaagagcatctcctatg 499
|||||||||||||||||||||
Sbjct: 221 ctaaaaagagcatctcctatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_g18.g1 MSMg01no346_g18.g1 CHROMAT_FILE:
MSMg01no346_g18.g1 PHD_FILE: MSMg01no346_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:07 2005
(483 letters)
>mm_chr5_57200769_57201645
Length = 877
Score = 803 bits (415), Expect = 0.0
Identities = 455/483 (94%), Gaps = 24/483 (4%)
Strand = Plus / Plus
Query: 1 cttgtccacaagtcaaagaatatttgaggaaattcacatttttaagtaaatttctaatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtccacaagtcaaagaatatttgaggaaattcacatttttaagtaaatttctaatca 260
Query: 61 actataatttaaatattcaaaagtctttagtcacaggaaggttggatgagttttatgatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actataatttaaatattcaaaagtctttagtcacaggaaggttggatgagttttatgatc 320
Query: 121 ggtttactctttcctgacctgtgtgtcttttctctaacttggagaaaatggaaagtcaaa 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tgtttactctttcctgacctgtgtgtcttttctctaacttggagacaatggaaagtcaaa 380
Query: 181 caggaaaggaagctaagaaaaacaaatgttgttgctgttagtcaagacattcaagatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggaaaggaagctaagaaaaacaaatgttgttgctgttagtcaagacattcaagatgag 440
Query: 241 gaggggttgaaaattaagtcaaatgcgtacatatgtgcatgaatacagaactatatgcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggggttgaaaattaagtcaaatgcgtacatatgtgcatgaatacagaactatatgcag 500
Query: 301 atctatgctttgccagctgcacacaggaatgaatcgccatgaacatgccttaaatcaaac 360
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 atctatgctttgccagctgcacacaggaatgaatcg------acatgccttaaatcaaac 554
Query: 361 aattaggatgatctgatgatgaatcagtaagatatgatgaagaaactgaccaccagggtg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 555 aattaggatgatctgatgatgaatcagtaagatatgatgaagaaactgaccaccagtgtg 614
Query: 421 aaaacttgataacattgacaacctacaaagaataatcacattatgtaaacgctaagtaaa 480
||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 615 aaa------------------cctacaaagaatgatcacattatgtaaacgctaagtaaa 656
Query: 481 att 483
|||
Sbjct: 657 att 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 877
Length adjustment: 10
Effective length of query: 473
Effective length of database: 867
Effective search space: 410091
Effective search space used: 410091
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
