Query= MSMg01no346_i09.b1 MSMg01no346_i09.b1 CHROMAT_FILE:
MSMg01no346_i09.b1 PHD_FILE: MSMg01no346_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:14 2005
(360 letters)
>mm_chr5_104076268_104077027
Length = 760
Score = 627 bits (324), Expect = 0.0
Identities = 348/356 (97%)
Strand = Plus / Plus
Query: 5 gaattccaggtctgcccacagtgaatcacaacagccagagccactgtgtgtgtcctggaa 64
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggccagtccacagtgaatcacaacagccagagccactgtgtgtgtcctggaa 264
Query: 65 atcacgccagggtcatatgcaagaacaacaagtgttcttaacctctaagaggtctctcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcacgccagggtcatatgcaagaacaacaagtgttcttaacctctaagaggtctctcca 324
Query: 125 gcccttgagattggctctcaaaagagtggtagtttggatggatacaaggtaagaggttac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcccttgagattggctctcaaaagagtggtagtttggatggatacaaggtaagaggttac 384
Query: 185 taaaaaaaaagaagtaaacagaacaactcattctggcatcagggacttgctctttttttt 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 taaaaaaaaagaagtaaacagaacaactcattccggcatcagggacttgctctttttttt 444
Query: 245 ttttcaaaatgcctacctaagtttcaacatatgttataagacatgcgaagcccaagactg 304
||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||
Sbjct: 445 ttttcaaaatgcctacctaagtttcaacagaagttataagacatgcgaagcccaaggctg 504
Query: 305 ttgttcatcgaaatactgctataccgtggtgccttttatgattccaggggaggaga 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 ttgttcatcgaaatactgctataccgtggtgccttttatgaatccaggggaggaga 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space: 263601
Effective search space used: 263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_i09.g1 MSMg01no346_i09.g1 CHROMAT_FILE:
MSMg01no346_i09.g1 PHD_FILE: MSMg01no346_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:14 2005
(384 letters)
>mm_chr5_104149754_104150537
Length = 784
Score = 534 bits (276), Expect = e-156
Identities = 334/384 (86%), Gaps = 47/384 (12%)
Strand = Plus / Minus
Query: 1 caactctggtccctgaattcttcacttgatcttagccaaaaggccgagaagtgatggtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 733 caactctggtccctgaattcttcacttgatcttagccaaaaggccgagaagcgatggtcc 674
Query: 61 ctgaattctgaaggaagctcccagccagtctcacagggtaagtggtgtcacagctgagct 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 673 ctgaattctgaaggaagctcccagccagtctcacagggtaagtggtatcacagctgagct 614
Query: 121 gttcggacagaaaggattctccctgcctcagcatccaacagactccaaacacgagcagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gttcggacagaaaggattctccctgcctcagcatccaacagactccaaacacgagcagtg 554
Query: 181 tgttcactcatatctaagcatccaacagactccaaacacgagcagtgtgttcattcatat 240
|||||| ||||||||||||
Sbjct: 553 tgttcattcatatctaagc----------------------------------------- 535
Query: 241 ctaatccgaggggatggcccggacagtgtgcacttcatggaaagcagggacaagattgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ------cgaggggatggcccggacagtgtgcacttcatggaaagcagggacaagattgta 481
Query: 301 tcatcagctttcggttgtcagcattcctacagctatgatggaaggctggtggggggaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tcatcagctttcggttgtcagcattcctacagctatgatggaaggctggtggggggaggg 421
Query: 361 ggaaggttggaagccacatgcaaa 384
||||||||||||||||||||||||
Sbjct: 420 ggaaggttggaagccacatgcaaa 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space: 290625
Effective search space used: 290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
