BAC Information

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BAC

Clone NameMSMg01-348J06
Chromosome5 (Build37)
Map Location 147,269,156 - 147,269,433
singlet/doubletsinglet
Overlap geneWasf3
Upstream geneLOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8
Downstream geneLOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348J06.T7 (MSMg01no348_j06.b1)MSMg01-348J06.TJ (MSMg01no348_j06.g1)
ACCAG460641AG460642
length723779
length of high quality
(start - end)
437 (60 - 496)282 (72 - 353)
definitionCHROMAT_FILE: MSMg01no348_j06.b1 PHD_FILE: MSMg01no348_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:55 2005CHROMAT_FILE: MSMg01no348_j06.g1 PHD_FILE: MSMg01no348_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCGCTATACGACTNCACTTCAAAAGAGGATCCGCGGAATTCTC
CATTACGAGCGTCATAAAGCGTAGGCTTCTGTGGGTGGGAGTGTGGCCCG
GTTTGTAGAGTGCTTGCTTAGCATGCGGGAAGCCCTGGGTTTGATCCTCA
GGACTGCCTGAAAAAGGGCACGGTGAGGCGTGCCTATAAGCAGGGCACTC
AGGAGATGGGCAGCAGGAAGATCAGGAGTTCTGGGTTGTGTCAGGTTGTG
TACATACAGTTTTGAAGCCAGCCAGGGCTGCACAAGACCCTGCCTCAGAA
AACAAGCATTCACAAACCTCCAAACCAACCAACCGACCAACCAAGCAAAC
ACATGTTCCAGAGACTTTGGCATCCAATGATTTTTGGCAAATGCTGCACA
CTAGGTGCTCTGACTGCCACATGGAATGCACTTTAATGGTTTATGATCAG
AATATTAGAAATTTCCCTACACACTACATTGAATATTTTTTTTGTTTGGC
ATATTTAATAAACTATACCCAGACTACAATTTCTCCTGTCCTCTCTCTCC
AGCTTACCCCCTGCTCCTCTCCTCTTTCATTTCTCTTCAGAAAAGGGTAG
GCTCTCCTGCGTAAGTCAACCCGCCATGGTATGCCTTAGCACTGTAAGAC
TAGGCCCCCCTCTCCTATTTAGGCTGGTTGAGGTATATCATCAATGGCAA
CGGTTCCCATATAGCTTTTCCGG
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTCGATGTGTGTGAATCCAACGTTTTC
TGTATCCTCTCCTGTTGACAGTCACCAATTAGCTGTCATGAGCAACACAA
CAGTAAAGCTTGGGGAGAAACTATCTCTGTGGCAAGATGACTTAGAGTCT
GTCCTCTGGGCAATCCCAGCAGTGGCAAAGCTGACCTGTTTTTGATTTCA
GGGGACCTCTATGTTGCTTTCCTAGATGTGGGACTCATTTATTTGTGTGC
CCAGCAGTGGCTCTTTTTTCTCTATATCCTCATAGGCTGTGGTTTTCTTA
TTGAGTACTGCTCTAAGTTGAGATGGATTCTGAGTATAGCTTCCATCCTA
TGGAGGTACTTGTAAGGCTCCTTCCTGGGCATTCTGTGTATTGGCATGTC
CTGAGGGCTGGCGTTCTGGATTATTTTTCCACTTGTCATGTGGTGCCTTA
TGCCCTGTGGCAATATGTCTTGTCTTCTTCACTCCCCTTGCATGAAAATT
TTTCCTGATTCTCGCCCCATTGTTTTTTTCTTTTTACCCTTCCCCGACCT
CCCCTTCTATATCGCCTTATTGTTGCTCACTTGTTTCCTTTCCCTTACTT
ACACCCCTTTTTTTCTTCCCCACTCCCCTTTTTTTCTGCTATCTTGTTTT
ATTTTCTTCTCCCCCCCATGCTTCTTTTTTCTTCTCTCGTTTTCCTTTGC
TCTTCCCCCACTCCCTTTTTTCTTTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_j06.g1 MSMg01no348_j06.g1 CHROMAT_FILE:
MSMg01no348_j06.g1 PHD_FILE: MSMg01no348_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:55 2005
         (282 letters)



>mm_chr5_147268956_147269636
          Length = 681

 Score =  509 bits (263), Expect = e-148
 Identities = 275/279 (98%), Gaps = 1/279 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttcgatgtgtgtgaatccaacgttttctgtatcctctcctgttgacagtcaccaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttcgatgtgtgtgaatccaacgttttctgtatcctctcctgttgacagtcaccaatta 260

                                                                       
Query: 61  gctgtcatgagcaacacaacagtaaagcttggggagaaactatctctgtggcaagatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtcatgagcaacacaacagtaaagcttggggagaaactatctctgtggcaagatgac 320

                                                                       
Query: 121 ttagagtctgtcctctgggcaatcccagcagtggcaaagctgacctgtttttgatttcag 180
           ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ttagagtctgtcctctgggcagtcccagcagtg-caaagctgacctgtttttgatttcag 379

                                                                       
Query: 181 gggacctctatgttgctttcctagatgtgggactcatttatttgtgtgcccagcagtggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gggacctctatgttgctttcctagatgtgggactcatttatttgtgtgcccagcagtggc 439

                                                  
Query: 241 tcttttttctctatatcctcataggctgtggttttctta 279
           ||  |||||||||||||||||||||||||||||||||||
Sbjct: 440 tcccttttctctatatcctcataggctgtggttttctta 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 681
Length adjustment: 9
Effective length of query: 273
Effective length of database: 672
Effective search space:   183456
Effective search space used:   183456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)