BAC Information

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BAC

Clone NameMSMg01-348J10
Chromosome5 (Build37)
Map Location 117,769,635 - 117,770,096
singlet/doubletsinglet
Overlap geneBC023744
Upstream gene4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359
Downstream geneLOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348J10.T7 (MSMg01no348_j10.b1)MSMg01-348J10.TJ (MSMg01no348_j10.g1)
ACCAG460649AG460650
length742744
length of high quality
(start - end)
466 (37 - 502)398 (71 - 468)
definitionCHROMAT_FILE: MSMg01no348_j10.b1 PHD_FILE: MSMg01no348_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:56 2005CHROMAT_FILE: MSMg01no348_j10.g1 PHD_FILE: MSMg01no348_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGCGA
TTTCGCTAAACTCAAACATCCTTTTCTAATCTATATGTTTTGCTAAGCAC
ACCCCCCCGCACGCGCGCGCGCGCCTCTTCCCACCCCCCACCCCATCCCC
CGCACGCGGTACTTTTCTGCAACAACGCTAGGTAGATGTGCTACAATAAG
ACCATTCGCCACCTATATCTCGTAGCGGGGGCGGGGGGGGTTAATCTTTG
GTCAAGTCTGAAATGACTTGAAAAGAAAAAGTAAGAGGAGAAGAGAAAAG
GAATGGAATATTAAAAAGGCGCGGCTTGGAACGCACGGGTCGGCTCATGT
AGACTCACTCCGGGAGGGCGTAAGGAAGCAACTCCGTAATTTACAGGTGT
AAGGCCGGGTCAATCTGGGAAGCGGCGAGACAGTGAGATGGACACAAATG
GAAGCTTACAGCGAGGTGCGCCGATGCGGCGGGCAAAGCCAGAACACGGA
GTTAACAACGAAAAGGGAAGGGGCGGGGGATCGCTTTCCCCTCCACGTGC
CCCTCGGTCGGTCCTGCCGCACGTTTACTGCGTCGGCTTTATGTTCCCCC
GGTTTGCGGTTGGCTACGTCCCTACTTGTCGCGTTCTTGGGGTTTAACAA
TTGTCCCCGAGTTATACACTCAACCCGCAGTCTGGCCCTGGCTTCCGAAA
TTAACCCCCCTGGTAAATGCTATCTCCTCTTTATATATCGGC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCTGACTCTACCTCCTAAACACTAGGATT
TCCCCCAAGCTCTTACTACATAGTCCGGACCCGCCTAGAACTCCTCCTAT
GTTGTAGATCAGGCTGCCTTTGAACTCCCAGAGATCCACCTGCCTCTACC
TCCTGAGTGCTGGAAGTTTAAAGGCGTGTGCCACCACCAGGCTTGGCTTC
CAGGTGGTTTTTAATGTATTAAACCAATGAACAAAACTGTGTGTGCCCAC
GTCACTTGCTCTCATATACTCCAGCGCTGGACAGTCACTAACTTTCTGTC
TGATTGTGGACATTTCATTATGTGTGGGATCAGACCCCATGTGGCACTGT
GTGAGTATGTGAGAGCCTTCCACTTTGCATGATATTTTCTAGACTCATCC
ATGTTGTATCATGTGCCACCTGTTTCAATACTCCATTCCCTTTTAAGACC
AGCAGTGCATGCCGGTGATACTGTCTCCTGTGTGTTTCTCACCTGATGCC
CCCTTGATGTGTCTTCTTTCGCCGATCGTTATCTCTGATGTGACCCTCCC
CCTATGCTTTGTTGCGCTTTTTGTTTCCCTCTTTTTCCTATCTTCCTTTT
CCCTCTTTATTCCTCCTCCCTTTCTTTTCATTTCTTTACATCCCTCCACC
ACTTCTTTTTCTCCCCTTTGTCTTTTCTCCCCCCCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_j10.b1 MSMg01no348_j10.b1 CHROMAT_FILE:
MSMg01no348_j10.b1 PHD_FILE: MSMg01no348_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:56 2005
         (466 letters)



>mm_chr5_117769247_117770111
          Length = 865

 Score =  712 bits (368), Expect = 0.0
 Identities = 433/462 (93%), Gaps = 16/462 (3%)
 Strand = Plus / Minus

                                                                       
Query: 21  taaactcaaacatccttttctaatctatatgttttgctaagcaca----cccccccgca- 75
           |||||||||||||||||||||||||||||||||||||||||||||    |||||||||| 
Sbjct: 850 taaactcaaacatccttttctaatctatatgttttgctaagcacactcccccccccgcac 791

                                                                       
Query: 76  -cgcgcgcgcgcgcctcttcccacccccc-accccatcccccgcacgcggtacttttctg 133
            |||||||||||||||||||||||||||| |||| | ||||| | |||||||||||||||
Sbjct: 790 gcgcgcgcgcgcgcctcttcccaccccccaacccaaaccccctcgcgcggtacttttctg 731

                                                                       
Query: 134 caacaacgctaggtagatgtgctacaataagaccattcgccacctatatctcgtagc--- 190
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   
Sbjct: 730 caacaacgctaggtagatgagctacaataagaccattcgccacctatatctcgtagcggg 671

                                                                       
Query: 191 -gggggcg-----gggggggttaatctttggtcaagtctgaaatgacttgaaaagaaaaa 244
            |||||||     ||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 670 ggggggcgggggtggggggggtaatctttggtcaagtctgaaatgacttcaaaagaaaaa 611

                                                                       
Query: 245 gtaagaggagaagagaaaaggaatggaatattaaaaaggcgcggcttggaacgcacgggt 304
           |||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||
Sbjct: 610 gtaagaggagaagagaaaaggaatggaagaggaaaaaggcgcggcttggaacgcacgggt 551

                                                                       
Query: 305 cggctcatgtagactcactccgggagggcgtaaggaagcaactccgtaatttacaggtgt 364
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cggctcaggtaaactcactccgggagggcgtaaggaagcaactccgtaatttacaggtgt 491

                                                                       
Query: 365 aaggccgggtcaatctgggaagcggcgagacagtgagatggacacaaatggaagcttaca 424
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 490 aaggccgggtcaatctgggaagcggggagacagtgagatggacacaaatggaagcttaca 431

                                                     
Query: 425 gcgaggtgcgccgatgcggcgggcaaagccagaacacggagt 466
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gcgaggtgcgccgatgcggcgggcaaagccagaacacggagt 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 865
Length adjustment: 10
Effective length of query: 456
Effective length of database: 855
Effective search space:   389880
Effective search space used:   389880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)