BAC Information

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BAC

Clone NameMSMg01-348O05
Chromosome5 (Build37)
Map Location 17,982,346 - 17,982,587
singlet/doubletsinglet
Overlap genenone
Upstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
Downstream geneLOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348O05.T7 (MSMg01no348_o05.b1)MSMg01-348O05.TJ (MSMg01no348_o05.g1)
ACCAG460876AG460877
length716725
length of high quality
(start - end)
243 (66 - 308)335 (71 - 405)
definitionCHROMAT_FILE: MSMg01no348_o05.b1 PHD_FILE: MSMg01no348_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:20 2005CHROMAT_FILE: MSMg01no348_o05.g1 PHD_FILE: MSMg01no348_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGTCGCTAAACGACTCACTTCTGCAAACGGAGCCGCGGAATTCATA
ATTTGCATAAAAAGCTGAATTAAGAATTAATCTACTAAATGACTGCATTC
AGAACTGTGATAATACAATAACTGGTAGTATGTGTGCATTATCAGAATCT
TGAGAGCAAAGATGTCTCAGTATATATTATATACATATAGAGTTATATAT
TTTAATATATATTTATATAATATATAATGTATAATTTTATATTATACATA
ATTTTATATAGCATATAATATAGCATTAATATTCTAAAATTAATATATTA
TATAATTTTATGTTATATATACTATGCTATATATAATAAATTTATAGTAT
ATCATATAACATGTATATAATATATTTGCTCACATTTTAATGAACTCTGA
CTTAGCCAATTACTTGTCTATGTTTAATTGAAAGGACAGTTTAGGAGTGT
ACTCTTATTGTCTATTCAGGAAGCAAGAACAAATACTGATTTTATCATGT
TGAGGATTCTCACCATCATGTTTCTAGCTTACGAACATGGCCCAGGTATA
ATATCATGAAGACTATATTATCACCGCCACTTGGTTGCTGCAGGAGAGTT
AGAAGACTGAAGTTCCCACCCAACTCCCACGCCTTGTGCTTGCCCTTGTC
CTATAAATAGCTTTACCCCTTTACCGCTTATTTATTACGCTCCCCACACG
TGTTTTTTTTGTCTTT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATG
GGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATG
TGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTT
TCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAG
GATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTA
TTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTC
TATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTT
CATAACACGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGT
TTGTGCAGAACTGGAATTATATCTTCTTTGAAGGTCTGATAGAACTCTGC
ACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAA
CTGCTTCTATTTCCTTTAGTGATATGCGACTGCTTATATGGTCAACTTGA
TCCTGACTCAAATTTGTCACCCGCTATCTGTCCTCATTTTTTTCCTTTCC
TTCCATTTTTTCTCTGTTTTCCCTAACACCCTCTTTTTTTTCATAGATCC
GTACGTTTTTTTTCTTCTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_o05.b1 MSMg01no348_o05.b1 CHROMAT_FILE:
MSMg01no348_o05.b1 PHD_FILE: MSMg01no348_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:20 2005
         (243 letters)



>mm_chr5_17982146_17982788
          Length = 643

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaattaagaattaatctactaaatgactgcattcagaactgtgataatacaataactgg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaattaagaattaatctacaaaatgactgcattcagaactgtgataatacaataactgg 260

                                                                       
Query: 61  tagtatgtgtgcattatcagaatcttgagagcaaagatgtctcagtatatattatataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtatgtgtgcattatcagaatcttgagagcaaagatgtctcagtatatattatataca 320

                                                                       
Query: 121 tatagagttatatattttaatatatatttatataatatataatgtataattttatattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatagagttatatattttaatatatatttatataatatataatgtataattttatattat 380

                                                                       
Query: 181 acataattttatatagcatataatatagcattaatattctaaaattaatatattatataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acataattttatatagcatataatatagcattaatattctaaaattaatatattatataa 440

             
Query: 241 tt 242
           ||
Sbjct: 441 tt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)