Query= MSMg01no348_o24.b1 MSMg01no348_o24.b1 CHROMAT_FILE:
MSMg01no348_o24.b1 PHD_FILE: MSMg01no348_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:24 2005
(525 letters)
>mm_chr5_23935967_23936891
Length = 925
Score = 868 bits (449), Expect = 0.0
Identities = 501/523 (95%), Gaps = 13/523 (2%)
Strand = Plus / Plus
Query: 5 gaattccatagtggcttagcaatctaagctgccccttccccagcactggcttaggcactg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatagtggcttagcaatctaagctgccccttccccagcactggcttaggcactg 264
Query: 65 gactaaggacaaagtatgtgctggagccccttcttgtttctgggagctgtcagtgcaccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gactaaggacaaagtatgtgctggagccccttcttgtttctgggagctgtcagtgcaccc 324
Query: 125 atttggaaagcaagcatcaccacgtgaggtggcagcagacagaacaccactccatccagt 184
|||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 325 atttggaaagcaagtgtcaccacatgaggtggcagcagatagaacaccactccatccagt 384
Query: 185 gatccagctcccacagagacagcaccaggagtatataggagtgtggggggtactagccaa 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 gatccagctcccacagagacagcacctggagtatataggagtgtggggggtactagccaa 444
Query: 245 agaaggcttccagcaggaaatgactttgaatgaaacctcaaggttacgactatcacggac 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 agaaggcttccagcaggaaatgactttgaatgaaacctcaaggttacgactatcacagac 504
Query: 305 ctgttgttttctgggtaccaggcagtgtgatgtgctatggaaataaagggcatggtggcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgttgttttctgggtaccaggcagtgtgatgtgctatggaaataaagggcatggtggcc 564
Query: 365 ctctagagagcaagttcataggct-tactgcatgccaggcaggccggggaacaggtggga 423
|||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct: 565 ctctagagagcaagttcataggctct-ctgcatgccaggctggccggggaacaggtggga 623
Query: 424 gccacagagaaagcctggcactgaggaaggaaagaagcaggcaagactgacacagcaagg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 624 gccacagagaaagcctggcactgaggaaggaaagaagcaggcaagactgacacagtaagg 683
Query: 484 ccatgtgctgagtggatgctggccttggcagaga-gttcactg 525
||||| || |||| |||||||||||| ||||||||
Sbjct: 684 ccatg--------gg-tgctt-ccttggcagagatgttcactg 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_o24.g1 MSMg01no348_o24.g1 CHROMAT_FILE:
MSMg01no348_o24.g1 PHD_FILE: MSMg01no348_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:24 2005
(475 letters)
>mm_chr5_24107699_24108573
Length = 875
Score = 919 bits (475), Expect = 0.0
Identities = 475/475 (100%)
Strand = Plus / Minus
Query: 1 cctaaccgagaaactatttgtggcgagggcagagtggctggcgagccccttgtcacctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cctaaccgagaaactatttgtggcgagggcagagtggctggcgagccccttgtcacctcc 417
Query: 61 cgtggtgttccctccccgagccgccaccgatgggccccgggcggcctgggcgcagcgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cgtggtgttccctccccgagccgccaccgatgggccccgggcggcctgggcgcagcgcag 357
Query: 121 ctgcccatcgcgcagcctccgggcagatcggctcgtctcgccgcttctgtgcgccgcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctgcccatcgcgcagcctccgggcagatcggctcgtctcgccgcttctgtgcgccgcttg 297
Query: 181 gaccacgcggagtgcacaggagggccgctccgtccccggcgcgtcgcaggcagaccccgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gaccacgcggagtgcacaggagggccgctccgtccccggcgcgtcgcaggcagaccccgg 237
Query: 241 gccgccggactatttctgtcttatcagtgcaggaatgcggcagccgcggcggcggcggcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gccgccggactatttctgtcttatcagtgcaggaatgcggcagccgcggcggcggcggcg 177
Query: 301 gcgggcgggcggcggcggcggcgtgggccgtgggccgtcagggcagccctgaaggggccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gcgggcgggcggcggcggcggcgtgggccgtgggccgtcagggcagccctgaaggggccc 117
Query: 361 cctccccactccgctcgagtagaagtgtgagagagcccagcaggactcagaggggagagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 cctccccactccgctcgagtagaagtgtgagagagcccagcaggactcagaggggagagt 57
Query: 421 tggaggaaaaaaaaggcagaaaagggaaagaaagaggaagagagagagagagtga 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 tggaggaaaaaaaaggcagaaaagggaaagaaagaggaagagagagagagagtga 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
