BAC Information

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BAC

Clone NameMSMg01-349L23
Chromosome5 (Build37)
Map Location 117,950,740 - 117,951,214
singlet/doubletsinglet
Overlap geneKsr2
Upstream gene1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5
Downstream geneNos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349L23.T7 (MSMg01no349_l23.b1)MSMg01-349L23.TJ (MSMg01no349_l23.g1)
ACCAG461529AG461530
length741797
length of high quality
(start - end)		479 (42 - 520)45 (76 - 120)
definitionCHROMAT_FILE: MSMg01no349_l23.b1 PHD_FILE: MSMg01no349_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:27 2005CHROMAT_FILE: MSMg01no349_l23.g1 PHD_FILE: MSMg01no349_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAATCCTTGTGCTCCGTGAGCTCAGGAGCCATGTGTGTCCATGGCTGCT
CCATCAGACAACACAAACACTTAGCAAAAAGTCAATAAACAACCACCAGT
CAATGTGTGGCTTACAGTGACCCCTTTTAAGTGGCAGAGCTGAACAGTCC
TGACTCTAGCACCCTGCTCTTAACAGCCCTTCTCAGATATATCAGAGACC
CTGTGAGCTTTGATCCAGCACATACTGAAGACCTACTGTGTGTCAGAGTC
TGTGCTGCATATATCCCAAACCTTGTCATCTGGGAAGCAGCAGAGAGTGC
GGTCCCTGGCCAGTAAGAGTCAAGGGGGGCAAGGCCGGCACAGTCACCTC
CAGGACTTCCTTTCGGACATCCACGATCCGGAACCAGTGGCGGAGCTGGG
GGAAGCCGTCCAGTTCAGCATTGCGTTCCTGCAGGGCCACCTTCTTCTTG
CANGACAGCTGTCGGCTGAAGTACTTCACCAGCTTGCTCTGCGGAGACAG
AGAGCACAGGNACACAGCTCAAAAACGCTGCCCTGGAGCACCGGGGAAAA
ACCTGAAATCGCCCGTAACCACAGCCCATTCTGAATCGAAAGAAGGTTAA
ACCCCAGGAAATCCACCCCTTCCTCCTAAAAAAACCCCGGAAAAAGGCCC
ACACAAAAAAAAAGANAATGGGAAGGGTTTCCTTTTTTTTG

NCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAGACAAACAAATGAAAGCCACTC
TGTTGGGCCTGTGACATGGCTCAGTGGGCAGAGGAGCTTGCTGTTCGCGT
GAAANACGCAGGNTCTGGCCGCGGGTCCNCCGNTCGTGCAGCTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTCTTTNGAAGTGGAATCTGGACCTGCCCT
TTTTGGGCCATGGCTACGTTGGAAAAATTTACCCGTATATCCGAATTTAA
CCCGGGTGGCCATCCTCCCCGCCCTAAAATGGGATAGGGAACTGAAATTT
TTTAAAAAAAGGGGGTTTTTTTAAAACCCCCCGGGTTTTTTCCTCCCAGG
GGGGACGCCCCCCCCCCCCCCCCCCCTTTTTGTTTCCCCCCCCCCCCCCT
CCCACAAAAAAAAGAGGGCTGTGGGGTGTCTCTCCCCCTCCCCCCGCCCG
GGGGNAANNNNNNNNAAATATCCTCCTTTTTTTTCTTGCTAAGAGATAAA
AAAAGGGGGGAGAAAATTTTNTGNNTTNTTTATTTTAATTCCTTTAATGT
TTTTATTCCTTTTNNTNCNNNTNNNNTNNNNCNCCCNNNNCCNNNTTTCN
NCNNNNNNTNNCTTTTTTTTNNNNTTNTTTTNTTTTTTTTCCTCCTTTNN
TTTTCNCCCCCCTCTTTTTTTTTTTTTCTCNCCCTCTTCTTCTCCCTTCT
TCCGGTCAACTTTTGCCCCTCCTCTCTTCTACCTATTTCTCTTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_l23.b1 MSMg01no349_l23.b1 CHROMAT_FILE:
MSMg01no349_l23.b1 PHD_FILE: MSMg01no349_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:27 2005
         (479 letters)



>mm_chr5_117950536_117951414
          Length = 879

 Score =  820 bits (424), Expect = 0.0
 Identities = 462/475 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaatccttgtgctccgtgagctcaggagccatgtgtgtccatggctgctccatc 64
           ||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||
Sbjct: 679 gaattccaatcctcgtgctccatgagctcaggagtcatgtgtgcccatggctgctccatc 620

                                                                       
Query: 65  agacaacacaaacacttagcaaaaagtcaataaacaaccaccagtcaatgtgtggcttac 124
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 619 agacaacacaaacacttagcaaaaagtcaatgaacaaccaccggtcaatgtgtggcttac 560

                                                                       
Query: 125 agtgaccccttttaagtggcagagctgaacagtcctgactctagcaccctgctcttaaca 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 559 agtgaccccttttaagtggcagagctgaacagtcctgactctagcaccttgctcttaaca 500

                                                                       
Query: 185 gcccttctcagatatatcagagaccctgtgagctttgatccagcacatactgaagaccta 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcccttctcagatatatcagagatcctgtgagctttgatccagcacatactgaagaccta 440

                                                                       
Query: 245 ctgtgtgtcagagtctgtgctgcatatatcccaaaccttgtcatctgggaagcagcagag 304
           ||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctgtgtgccagagtctgtgctgggtatatcccaaaccttgtcatctgggaagcagcagag 380

                                                                       
Query: 305 agtgcggtccctggccagtaagagtcaaggggggcaaggccggcacagtcacctccagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agtgcggtccctggccagtaagagtcaaggggggcaaggccggcacagtcacctccagga 320

                                                                       
Query: 365 cttcctttcggacatccacgatccggaaccagtggcggagctgggggaagccgtccagtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cttcctttcggacatccacgatccggaaccagtggcggagctgggggaagccgtccagtt 260

                                                                  
Query: 425 cagcattgcgttcctgcagggccaccttcttcttgcangacagctgtcggctgaa 479
           ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 259 cagcattgcgttcctgcagagccaccttcttcttgcaggacagctgtcggctgaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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