Query= MSMg01no349_n15.b1 MSMg01no349_n15.b1 CHROMAT_FILE:
MSMg01no349_n15.b1 PHD_FILE: MSMg01no349_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:35 2005
(597 letters)
>mm_chr5_101086363_101087357
Length = 995
Score = 1050 bits (543), Expect = 0.0
Identities = 576/588 (97%), Gaps = 2/588 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactctgtatactaggctggccttggactcacagaggtgtgttctgatccgctg 63
||||||||||||||| || |||||||||||| |||||||||| |||||||||||||||||
Sbjct: 204 ggaattcactctgtagaccaggctggccttgaactcacagagatgtgttctgatccgctg 263
Query: 64 cctctgggatccacggcctatgccacacacccggcaatgctaactttctgctatgacaag 123
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 cctctgggatccaaggcctatgccacacacccggcaatgctaactttctgct--gacaag 321
Query: 124 ctgaagctgagggaggagcaattcanagcacacacacaatgcagttgtgttagttaagaa 183
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 322 ctgaagctgagggaggagcaattcaaagcacacaaacaatgcagttgtgttagttaagaa 381
Query: 184 gttccttgcctagtgaacaggggttgttttgttttaataatttccataatttacagtagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gttccttgcctagtgaacaggggttgttttgttttaataatttccataatttacagtagg 441
Query: 244 gaaaacggagggagaacaaggctaaggtcgaacctggtgagccaggtgggctcccaccgc 303
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaaaacggaggaagaacaaggctaaggtcgaacctggtgagccaggtgggctcccaccgc 501
Query: 304 agccacagcagcgtagtaggggacggtctgaccactgttggctcccgccaggctcagcgc 363
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 502 agccacagcagcgtagtaggggacagtctgaccattgttggctcccgccaggctcagcgc 561
Query: 364 tgccaccatggcgaccccaaagccactaagccactgccttgtgttctcctggaacagcag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgccaccatggcgaccccaaagccactaagccactgccttgtgttctcctggaacagcag 621
Query: 424 tgctgtggacttcaggccgatcagagcatcgtctttcttgtcctaataccaggaacagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgctgtggacttcaggccgatcagagcatcgtctttcttgtcctaataccaggaacagaa 681
Query: 484 aagtgtgtttcaatatttaattcagtactatgaagatcacatttcctaagtagtcaactt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aagtgtgtttcaatatttaattcagtactatgaagatcacatttcctaagtagtcaactt 741
Query: 544 agccatttttaatatatttacaaggttatacaaccaacactgctctct 591
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agccatttttaatatatttacaaggttatacaaccaacactgctctct 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 995
Length adjustment: 10
Effective length of query: 587
Effective length of database: 985
Effective search space: 578195
Effective search space used: 578195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_n15.g1 MSMg01no349_n15.g1 CHROMAT_FILE:
MSMg01no349_n15.g1 PHD_FILE: MSMg01no349_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:35 2005
(555 letters)
>mm_chr5_101262201_101263155
Length = 955
Score = 1050 bits (543), Expect = 0.0
Identities = 552/555 (99%)
Strand = Plus / Minus
Query: 1 tttagtacagtcaagttggcacctatgattagccacaacagaggcgataaggctgagagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tttagtacagtcaagttggcacctatgattagccacaacagaggcgataaggctgagagc 696
Query: 61 tgcagactgagctataagctcagtgacctgtactcagcttacttagcagtgttccagggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgcagactgagctataagctcagtgacctgtactcagcttacttagcagtgttccagggc 636
Query: 121 cactggcttgcccacagagagcttaagagaagctctggaccttggagtcagattaacagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cactggcttgcccacagagagcttaagagaagctctggaccttggagtcagattaacagg 576
Query: 181 gaggatttggatcacagggaggcatctaggctcacttgcttcctaaatagtttatggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaggatttggatcacagggaggcatctaggctcacttgcttcctaaatagtttatggaaa 516
Query: 241 ggccctggtcggattagtaaaattagattgtgaagtctaaggactgtggggtgccagatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggccctggtcggattagtaaaattagattgtgaagtctaaggactgtggggtgccagatc 456
Query: 301 caaagtaagcatgcatctggctaaccccttggcttccatgagcagcgtggtttccttcga 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 455 caaagtaagcatgcatctggctaacccctcggcttccatgagcagcgtggtttccttcga 396
Query: 361 tgactttgctggaatagtctccccagtgatttgcgctgaaaggacagaacacacagccac 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgactttgctggaatagtctctccagtgatttgcgctgaaaggacagaacacacagccac 336
Query: 421 cacacacaaagtattctctctcatcaccccacttcctcgccagctaaggtgtaggttaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cacacacaaagtattctctctcatcaccccacttcctcgccagctaaggtgtaggttaca 276
Query: 481 caaacccctgacacatgtttgtgaagagtaagttacctcaatcaaagcactaagcagaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 275 caaacccctgacacatgtttgtgaagagtaagttacctcaatcaaagcactgagcagaga 216
Query: 541 gcgtgtgggttagca 555
|||||||||||||||
Sbjct: 215 gcgtgtgggttagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
