BAC Information

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BAC

Clone NameMSMg01-350J03
Chromosome5 (Build37)
Map Location 91,827,417 - 91,827,914
singlet/doubletsinglet
Overlap geneBtc
Upstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
Downstream gene9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350J03.T7 (MSMg01no350_j03.b1)MSMg01-350J03.TJ (MSMg01no350_j03.g1)
ACCAG462151AG462152
length738741
length of high quality
(start - end)		506 (79 - 584)483 (86 - 568)
definitionCHROMAT_FILE: MSMg01no350_j03.b1 PHD_FILE: MSMg01no350_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:32 2005CHROMAT_FILE: MSMg01no350_j03.g1 PHD_FILE: MSMg01no350_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCAAAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCATATCATTTACGTAATCTCCTAGTTTGATTATCAG
TTGTTAAGGTCAACTGACCATAAAATACTTTCGTTCATTCTTTACATTTT
TGAAGGGTATGTAGATTAGATTGTTATTCACTGATCTGTGGGTTAATGGC
ATGAATTACAGAATGAGTTTGGAGAGCCCAGCAGTGTTCATATTCACTTT
TCTTGATTTGAAAGTCTGGTATGAATTGCATAAAGGAATGGGTCAGTAAT
AGAACATTTGTATCTTTTAAAAATTCCACGTTTATTATTTGGCCTTCTTT
GCTCATGAAGGGTAGAATAGAGAATTCCTGGCATAAAATAGGAATTCAAA
ATGATTAGTTAATTGTATGGATAAGTGCACATGGCTGCTGGTGAGCATGT
TCCTACCAGAAAGTCACAAGTCGAATAAATCTTTTGATTTCATGTTGCAA
ACCAGTGTCCCATAGGTCAGAGATGCTGAAAGGCGTGGTTTTTCATCCCT
TCCTATGTGAGCTTGGCACTGCAGGTATGAAAGAGCCTTCCACAAGAAAG
GCTTTCATTTTGCAAAAAGTAAGATCATTTCTTCTGTTCTATGTTGAACA
TTCCAACATACTGTACATGTCTTTATATGCTTGTTTCTAAGGTAAGATTT
GAATCGCTCAACAACTTCCTTCATAGACGTATTTTTAT

NAAAAAACGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTACAAAGCTCA
TTAAGCACCGCTATCTATAACCATGCTACAGGCTAATACCATCCCGTTTT
GTTGTTGCTACAGAGTGATACTATGCTGCTTGAAATTGTTTTGATTTAGT
TTCACTTAAATTTTTAGTGCATTGGCAGTATACAGAAAATTGTTGTTCCT
AATGTAATATGAATGGCTTCTAGCTCAATTTCCACTAGAGTCCTTGTTTC
CCTCTGAAACACCATGGCTTGCCTTCATTATCTGCATTTGTATTAGTATT
CTGGGTTTCTGCAGTCCCATCCGAATGGACTACTTATAGTCTGGATATTC
TCTAGCCCTAGCTTCACATTTTCCTTGTGGGCTGTTTTCTAGGACCTATA
AGCCCCATGATAAGATTTAACGGTACCAATTGAGGTGTAATTTACTTTTC
TCATTGCTGACATCTTGCCCTGGCAAAATAGAAATGGTGACTTGAGGGTA
AGTCCCCACCTATTAAAAGCTCTAAATACACTTCCCATGCCCATTAGAAA
TGAGAATACCTGAAAAGAATGTCTGCGAGACACAACTATAGTGAGCTAAA
AATGAACGGCTTGTTCCTGTCTCAGGTTTGGAAAGATTCCGCTCCTGATG
GTTGAGAAAAACTGGCGGTTGGCACCAAATTTGGCTCACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_j03.b1 MSMg01no350_j03.b1 CHROMAT_FILE:
MSMg01no350_j03.b1 PHD_FILE: MSMg01no350_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:32 2005
         (506 letters)



>mm_chr5_91827267_91828172
          Length = 906

 Score =  835 bits (432), Expect = 0.0
 Identities = 484/506 (95%), Gaps = 8/506 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatctcctagtttgattatcagttgttaaggtcaactgaccataaaatactttcgttcat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 648 aatctcctagtttgattatcagttgttaaggtcaactgaccataaaatacttgcgttcat 589

                                                                       
Query: 61  tctttacatttttgaagggtatgtagattagattgttattcactgatctgtgggttaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tctttacatttttgaagggtatgtagattagattgttattcactgatctgtgggttaatg 529

                                                                       
Query: 121 gcatgaattacagaatgagtttggagagcccagcagtgttcatattcacttttcttgatt 180
           ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||
Sbjct: 528 gcatgaattacagaatgagtttggagagcccagtagtgttcacattcaattttcttgttt 469

                                                                       
Query: 181 tgaaagtctggtatgaattgcataaaggaatgggtcagtaatagaacatttgtatctttt 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgaaagtctggtatgaattccataaaggaatgggtcagtaatagaacatttgtatctttt 409

                                                                       
Query: 241 aaaaattccacgtttattatttggccttctttgctcatgaagggtagaatagagaattcc 300
           ||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 408 aaaaattccacattcattatttggccttctttgctcatgaagggttgaatagagaattcc 349

                                                                       
Query: 301 tggcataaaataggaattcaaaatgattagttaattgtatggataagtgcacatggctgc 360
           |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 348 tggcataaaataggaattaaaaatgattagttaattgaatggataagtgcacatggctgc 289

                                                                       
Query: 361 tggtgagcatgttcctaccagaaagtcacaagtcgaataaatcttttgatttcatgttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tggtgagcatgttcctaccagaaagtcacaagtcgaataaatcttttgatttcatgttgc 229

                                                                       
Query: 421 aaaccagtgtcccataggtcagagatgctgaaaggcgtggtttttcatcccttcctatgt 480
           ||| ||||| |||||||||||| |||||        ||||||||||||||||||||||||
Sbjct: 228 aaatcagtggcccataggtcagggatgc--------gtggtttttcatcccttcctatgt 177

                                     
Query: 481 gagcttggcactgcaggtatgaaaga 506
           ||||||||||||||||||||||||||
Sbjct: 176 gagcttggcactgcaggtatgaaaga 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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