BAC Information

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BAC

Clone NameMSMg01-351D05
Chromosome5 (Build37)
Map Location 15,185,197 - 15,185,643
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351D05.T7 (MSMg01no351_d05.b1)MSMg01-351D05.TJ (MSMg01no351_d05.g1)
ACCAG462629AG462630
length777759
length of high quality
(start - end)		488 (51 - 538)447 (83 - 529)
definitionCHROMAT_FILE: MSMg01no351_d05.b1 PHD_FILE: MSMg01no351_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:23 2005CHROMAT_FILE: MSMg01no351_d05.g1 PHD_FILE: MSMg01no351_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:24 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTT
GATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAG
TCCCCTATCTGATTTAGGATAAGTAAAGATCCTTTCCCAATCTGTTGGTG
GTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGT
TTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGC
TGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCC
CCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCC
TTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGAT
TCGCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGA
AAATGCTATCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATC
AAGTGACCATAGGTGTGTGGGTTCATTTCTGGGGCCTCCAATCTTTTTCC
TTTTGCCCAACTTGTCTGGCTCTTTAAACCGCACTCCTGCAGTTTTTTAC
CCAAATTTGCCCTCGCTGTAAAGCCTTTAAAGCCTTTGTATGTTTTGATT
TTCCCCCGTAAAGCTTTTCTCCTATCTTTGGAAAACAACATTTTATTGTT
TCCCCTCCCCGATTATACGTAATATCT

NTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGGAAAGAACAAGAG
CCCAAAAGGCAGAGGAGAAGTGTTCATGGGTGCACTAGCCAGTTACCTCT
GGAAGAGCAGCTGCATGGATTCAGGATGCACTTCATGCACACTGGGTGCC
ATGCTGGATGGCTGTGGAAAGTCATCTCTTACTAAGTCCTAATCAAAATG
CTTCTAGAGAACTCCACACTGAGTCAGTGTTTTCTGTTCCCAAGCAAACC
ACAGCACTGATCTCCATCTGTTTTTCTCTGACTCTTAAAACATCCTTCCA
AATTGAAAAACAAAGCACAAAATCATCTTAATTGCCTTGCCAAAGGATTG
GAAAGGAGCACCACTTTTTGTTCAAAAGACAACTTCAGAAAACAAAAGAG
AAGCCTCAAATGGGCCAAAAGCCACAAATTGAAAAACAAAAGAAAAACAA
GGCTGGCTGTCTACTGCCAGCAGGAGTTCACCAGGGAGAGGAGCTCTGAC
TCCAAAATAGTCACTTTTCCATTTTGTTCATGATGGCAAAAGGGCATGTG
TGCTGGCTAAAGGAAGGAAAGGATGTTCCAGGAAGAAAACAGGTCCCTTT
GGTGCAAGAACTGCATTCTCACTTGTATTCCAATGCTGAAAACTGTGCAG
AAGAAACTCTTGCGAGGGCTCCACCCATTTGGTGGACCCCCAAACTTTTC
TCCCCCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_d05.g1 MSMg01no351_d05.g1 CHROMAT_FILE:
MSMg01no351_d05.g1 PHD_FILE: MSMg01no351_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:24 2005
         (447 letters)



>mm_chr5_15184997_15185843
          Length = 847

 Score =  818 bits (423), Expect = 0.0
 Identities = 441/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 accaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccag 588

                                                                       
Query: 61  ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 528

                                                                       
Query: 121 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaac 468

                                                                       
Query: 181 tccacactgagtcagtgttttctgttcccaagcaaaccacagcactgatctccatctgtt 240
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tccacactgagtcagggctttctgttcccaagcaaaccacagcactgatctccatctgtt 408

                                                                       
Query: 241 tttctctgactcttaaaacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tttctctgactcttaagacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 348

                                                                       
Query: 301 tgccttgccaaaggattggaaaggagcaccactttttgttcaaaagacaacttcagaaaa 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 347 tgccttgccaaaggattggaaaggagcaccactttttgttcagaagacaacttcagaaaa 288

                                                                       
Query: 361 caaaagagaagcctcaaatgggccaaaagccacaaattgaaaaacaaaagaaaaacaagg 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 caaaagagaagcctcaaacgggccaaaagccacaaattgaaaaacaaaagaaaaacaagg 228

                                      
Query: 421 ctggctgtctactgccagcaggagttc 447
           |||||||||||||||||||||| ||||
Sbjct: 227 ctggctgtctactgccagcaggcgttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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