NNNCCCCNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTTCCTGTGACTTTTGAAAAAGATAATTTTTGCA
GGCTACCCAAACCTAGGTTTTATTTCACCAAAGATACATGAGTTAAACAG
CTGAAGATAACAGAATCACATTCATTAAAAGTTATTCCAGAGAATGCCCA
TTATGGGCATCACTCACACTTGGAATGGAAATTGGAAAGAGAGATCACAG
TGGAGTTTGGAATACTGAGTGTCTCAAGAAAAATTATCAATATTGTCTTT
CAACAATTCTGGTTTTGAGTGTGTTTCACTGTGATATTCCTTTTCCAATT
CGTATCTGTTCTATCTGGAGGAGGTAGGAGAGCAGGATGAAGAGCTACAG
GCTCAGTGAGATTAAATGATAACTTTTATAAGCATTGGGAAGGATAAGAG
AATCCCATGTAACTTGGGAATGCTATCAAAGAATTCCATAGACTATGTGG
CAGAACTGTTGGAATGTTGGTTAGGGTTATTTAGCATAGCCATATCAACT
AAATTCATGTGAATTCTGAAATGTCGGAATAGAAACAGAAATATCTATGA
ATGAAAGACTTTAACATAAGTAGNTTTAAGAGTAATTTATCATAAGCAGT
GCTTTTAAAAGATTCATCTTACTTAATGTGNAAATGTGNTTTTGCCTTCA
TGGGTATACGGTCATTATATGCCTGAATGTGCCC

NNNNNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAAC
TTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTA
ACAAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATT
ACATTGATGGATTTTCATATATTAAACCATCCCTGCATCTCTGGAATAAA
ACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGT
TAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATT
GGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAG
AGTAATAGTGGTTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTA
TTTTGTGAAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTC
TGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGG
GAGACTATTAATAACTGCTTCTATTTCTTTANGGGATATGGGACTGTTTA
GATGGTCAACTTGATCCTGATTCAACTTTGTTACCTGGTATCTGTCCAGA
AATTTGTCCATTTCTCCCACGTTTTCCAGTTTTGTTGAGATAACCCTTTT
GTAAAAGGAACCGAAGGCGTTTTTGGAATTCTTCCCCACCCG

Query= MSMg01no351_e17.b1 MSMg01no351_e17.b1 CHROMAT_FILE:
MSMg01no351_e17.b1 PHD_FILE: MSMg01no351_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:30 2005
         (569 letters)



>mm_chr5_22489921_22490889
          Length = 969

 Score = 1081 bits (559), Expect = 0.0
 Identities = 562/563 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcctgtgacttttgaaaaagataatttttgcaggctacccaaacctaggttt 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ggaattcttcctgtgaattttgaaaaagataatttttgcaggctacccaaacctaggttt 707

                                                                       
Query: 64  tatttcaccaaagatacatgagttaaacagctgaagataacagaatcacattcattaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tatttcaccaaagatacatgagttaaacagctgaagataacagaatcacattcattaaaa 647

                                                                       
Query: 124 gttattccagagaatgcccattatgggcatcactcacacttggaatggaaattggaaaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gttattccagagaatgcccattatgggcatcactcacacttggaatggaaattggaaaga 587

                                                                       
Query: 184 gagatcacagtggagtttggaatactgagtgtctcaagaaaaattatcaatattgtcttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gagatcacagtggagtttggaatactgagtgtctcaagaaaaattatcaatattgtcttt 527

                                                                       
Query: 244 caacaattctggttttgagtgtgtttcactgtgatattccttttccaattcgtatctgtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 caacaattctggttttgagtgtgtttcactgtgatattccttttccaattcgtatctgtt 467

                                                                       
Query: 304 ctatctggaggaggtaggagagcaggatgaagagctacaggctcagtgagattaaatgat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctatctggaggaggtaggagagcaggatgaagagctacaggctcagtgagattaaatgat 407

                                                                       
Query: 364 aacttttataagcattgggaaggataagagaatcccatgtaacttgggaatgctatcaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aacttttataagcattgggaaggataagagaatcccatgtaacttgggaatgctatcaaa 347

                                                                       
Query: 424 gaattccatagactatgtggcagaactgttggaatgttggttagggttatttagcatagc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gaattccatagactatgtggcagaactgttggaatgttggttagggttatttagcatagc 287

                                                                       
Query: 484 catatcaactaaattcatgtgaattctgaaatgtcggaatagaaacagaaatatctatga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 catatcaactaaattcatgtgaattctgaaatgtcggaatagaaacagaaatatctatga 227

                                  
Query: 544 atgaaagactttaacataagtag 566
           |||||||||||||||||||||||
Sbjct: 226 atgaaagactttaacataagtag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)