BAC Information

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BAC

Clone NameMSMg01-351L07
Chromosome5 (Build37)
Map Location 38,025,271 - 38,025,741
singlet/doubletsinglet
Overlap geneStk32b
Upstream geneLOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988
Downstream geneCytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351L07.T7 (MSMg01no351_l07.b1)MSMg01-351L07.TJ (MSMg01no351_l07.g1)
ACCAG463013AG463014
length632705
length of high quality
(start - end)		376 (60 - 435)472 (83 - 554)
definitionCHROMAT_FILE: MSMg01no351_l07.b1 PHD_FILE: MSMg01no351_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:01 2005CHROMAT_FILE: MSMg01no351_l07.g1 PHD_FILE: MSMg01no351_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAACCTCCNNNTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCAAGCATCCTCACTAGGGCCTTCCTTCTTGTT
TAATTTCTTAGGGTCTGTGGGGTGTATCATGAGTATTCTCCAATGTCTAT
TTTATTTTCCCTTCTGGGTGAGATTCAAGCATCCTCCCTTGGGCCCTCCT
TGTTATTTGGCTTCTTTGGGTCTGTGCTTCATTTACACAATGGAACACTA
CTACTCAGCTATTAGAAACAAGGACATCATGAAATTCACAGGCAAATGGA
TAGAACTAGAAAATATCATCCTGGGTGAGGTAACCCAGACCCAAAGGACA
TGCATAGTATGTGCTCACTTATAAGTAGATATTAGCTAAAGAAATATACG
GGATAAACATGCAAATCATTCTTTCCATGCTAAGATTTTAAGACTTGGGC
TTTCTCTCCTGCATGTTGTCACAGTCTCTGTGACATATGTGCAGCTTCCC
TGCTTCTGTCTGAAAAATTCCTCTCCTTGGATTTTATCTACTTTTTCTGG
GACCTGGCCATCTCTTGGTCCTCCTGGGTCTGATGTGGATCCCCTGAAGC
CCCAGAAAAGAAGGTGCGGGGGAATTCAAAAC

NAATTTAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACAGGTCACTGAAGGC
CTTTATGTACTGAACAATTGCTTACTTATACTTTGTGTCTCAAATATACT
GCAAACGGAAGAATTTCAGACATTTGACTTCATGTTATCGATTTCACTGC
CTGGAAAGATAATATTTTGGAGGTTTAACAGCATGCCCTATGTAATCCAC
GGAGATTCAGATGCCATTTATTGCCTTTGGACATTCCACTTCCTTAATAT
CATGTAGATTCTCTCCTGGGGTGCAGGATGAACTTTGAATTACTCAGTTC
TGGTGAGGGAGAGCAGTACATTCAGGATCCCCCCTGTCTTGAACATATAC
AGAGTGTGTAGCAGCAGAAAGGGGTCTAATTTCTAACAGAAGAGCATCTG
GAGGTGTCAAGAGAAAACCAGAGCTCTTTAGCCCGCTACCTGGCCCACTG
TCTTATTTCTAGTATCTTTTACCACATCATTTCCCCCGGGAAGGCAGTGT
CAGTGGTGATTAACAGATGGGGAGGTGGAGAGAATGGGTTTTTCTTTTTA
TCCCTGAAAAAATCCCTGTCTCCGTCTATGTTTTTCTCTTCGGATTTCGA
CTAAAAACTATGTAAATCATCATCTTCGTCTATCAATTAACTTAATTATC
CACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_l07.g1 MSMg01no351_l07.g1 CHROMAT_FILE:
MSMg01no351_l07.g1 PHD_FILE: MSMg01no351_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:01 2005
         (472 letters)



>mm_chr5_38025071_38025941
          Length = 871

 Score =  851 bits (440), Expect = 0.0
 Identities = 464/472 (98%), Gaps = 1/472 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacaggtcactgaaggcctttatgtactgaacaattgcttacttatactttgtgtctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ccacaggtcactgaaggcctttatgtactgaacaattgcttacttatactttgtgtctca 612

                                                                       
Query: 61  aatatactgcaaacggaagaatttcagacatttgacttcatgttatcgatttcactgcct 120
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 611 aatatactgcacacggaagaatttcagacctttgacttcatgttatcgatttcactgcct 552

                                                                       
Query: 121 ggaaagataatattttggaggtttaacagcatgccctatgtaatccacggagattcagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggaaagataatattttggaggtttaacagcatgccctatgtaatccacggagattcagat 492

                                                                       
Query: 181 gccatttattgcctttggacattccacttccttaatatcatgtagattctctcctggggt 240
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gccatttattgtctttggaca-tccacttccttaatatcatgtagattctctcctggggt 433

                                                                       
Query: 241 gcaggatgaactttgaattactcagttctggtgagggagagcagtacattcaggatcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gcaggatgaactttgaattactcagttctggtgagggagagcagtacattcaggatcccc 373

                                                                       
Query: 301 cctgtcttgaacatatacagagtgtgtagcagcagaaaggggtctaatttctaacagaag 360
           ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 372 cctgtcttgaacagatacagagtgtgtggcagcagaaaggggtctaatttctaacagaag 313

                                                                       
Query: 361 agcatctggaggtgtcaagagaaaaccagagctctttagcccgctacctggcccactgtc 420
           ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 312 agcatctggagatgtcaagagaaaaccagagctctttagcccgctacctgccccactgtc 253

                                                               
Query: 421 ttatttctagtatcttttaccacatcatttcccccgggaaggcagtgtcagt 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttatttctagtatcttttaccacatcatttcccccgggaaggcagtgtcagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 871
Length adjustment: 10
Effective length of query: 462
Effective length of database: 861
Effective search space:   397782
Effective search space used:   397782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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