BAC Information

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BAC

Clone NameMSMg01-352C02
Chromosome5 (Build37)
Map Location 18,470,203 - 18,470,450
singlet/doubletsinglet
Overlap genenone
Upstream geneGnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352C02.T7 (MSMg01no352_c02.b1)MSMg01-352C02.TJ (MSMg01no352_c02.g1)
ACCAG463334AG463335
length772777
length of high quality
(start - end)
251 (53 - 303)110 (82 - 191)
definitionCHROMAT_FILE: MSMg01no352_c02.b1 PHD_FILE: MSMg01no352_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:33 2005CHROMAT_FILE: MSMg01no352_c02.g1 PHD_FILE: MSMg01no352_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:33 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTAATATTTCGAATTTTCATGGCCATTCACCTTACTCT
GAAGACTACCACACTATTAATTATTATTTTTTGTATGAATCTAACTCACC
TTGTCATTTTCTGTCATATATGGGGATAAGGAATAGGCCAAGGTATCATC
AGCTTGTGTTTGAAGCTCTGGTTGATTGAACATGCAGATGATCACTTGAT
GGTGTGGAGCCTTGAGTGTCGCGTTCAGTGCTTCATCTTTAGTTTGACAG
CAATACTGAACTAATGACANTTTTATGTTTGTCTTAATCCTGGNTGGGCT
GGGTTAGTTGGGTAGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGT
GGGGGGGGGGCCCCCCCTCAATAGAAAAATTCACAAAGGCAGATTCCATT
ATTNTAAAATTTCCTTAATTTGTATCTGTTATTCTTTTTGGGCNTTAAAA
AAATGNNANNNNANAANCCTTTATTTCCNNGCCAATTTTTCTTNANNTTT
TGAATTTTTGGAGGGGAGCGGGGGGGCTGCNCNTTTCCTTCCCCTAATTC
CCCTCCTTTTTCTCCTTCTTTTTTTCCTANCCCTTTTTTATTTTTTCCCA
TTCCNCCTCTCCTTTCTTCCCTCTCCAACCCCCCTCNCNNNNNNNNNNCN
NNNNNCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCNNNNCNCC
CCCNCCCAAAACCAAGCCCGAG
GGCGTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAGCAATTGTGTGTGTT
TACCTCTGTGTACATGTGAATGCTTGTTTATGCCTCTCTCTCTTTGTATG
TATGTATGTATGTATGTATGTATGTATATATATATATATATACACACATA
CATATATATACCTATATATATACACATACAGACACATACACATATATATT
TTTACATCCATTTATAACCACACACATAATTTTTTTAAAATTCCCCCTTA
TTTTTATATAAATACCCACATATATCTATTTTCTTCTCCCTCCCACTCTT
ACCTACTCAATAATACTTTTTGGCATGGTTCTCCTATATACAGCCATATT
AGGCCCCTATATTTTATGTACGCCCTATTTTCCCTATCCTCCTCTTTCCC
CTTATCCCTTCCGCTTCTTCCCCCTTGTCCTTATTGTTTTCCTCTTCCTC
CGCATCTTCATTAGCCTCTTTTGTTATACCACCGCTATTCTACTTATCCC
CTTATGCTTTCCTATTTTTTTTCCCTTCCAACTCCCCCATCCCTCCTTCT
TCTCCCTCTTTCTCTTCCTCTTTTCTTATTTCCTTTTTCCTTTCTTTCCC
TACCCCTTTTCTCTCCATCTCCAATTTCTTCCTCCCCCCCACCCTTTCTT
CAATCCCCCCTATACCCTCCCTCATAATTATCCATCTCCTCCTCTTCTAC
TTTTCCCCCTTCCTTACCCTTCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_c02.b1 MSMg01no352_c02.b1 CHROMAT_FILE:
MSMg01no352_c02.b1 PHD_FILE: MSMg01no352_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:33 2005
         (251 letters)



>mm_chr5_18469999_18470650
          Length = 652

 Score =  441 bits (228), Expect = e-128
 Identities = 243/248 (97%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaatatttcgaattttcatggccattcaccttactctgaagac-taccacact 63
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 452 gaattcttaatattttgaattttcatggccattcaccttactctgaagacataccacact 393

                                                                       
Query: 64  attaattattattttttgtatgaatctaactcaccttgtcattttctgtcatatatgggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 attaattattattttttgtatgaatctaactcaccttgtcattttctgtcatatatgggg 333

                                                                       
Query: 124 ataaggaataggccaaggtatcatcagcttgtgtttgaagctctggttgattgaacatgc 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ataatgaataggccaaggtatcatcagcttgtgtttgaagctctggttgattgaacatgc 273

                                                                       
Query: 184 agatgatcacttgatggtgtggagccttgagtgtcgcgttcagtgcttcatctttagttt 243
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 272 agatgatcacttgatggtgtggagccttgagtgtcacgctcagtgcttcatctttagttt 213

                   
Query: 244 gacagcaa 251
           ||||||||
Sbjct: 212 gacagcaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 652
Length adjustment: 9
Effective length of query: 242
Effective length of database: 643
Effective search space:   155606
Effective search space used:   155606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)