Query= MSMg01no352_d04.b1 MSMg01no352_d04.b1 CHROMAT_FILE:
MSMg01no352_d04.b1 PHD_FILE: MSMg01no352_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:39 2005
(510 letters)
>mm_chr5_33353020_33353928
Length = 909
Score = 917 bits (474), Expect = 0.0
Identities = 498/506 (98%), Gaps = 1/506 (0%)
Strand = Plus / Plus
Query: 5 gaattcatctgtctttcccaccaggcagatgaccagcaataaacctctcagctggcaaag 64
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcatctgcctttcccac-aggcagatgaccagcaataaacctctcagctggcaacg 263
Query: 65 tcccgagggactgctgacctggtcagccccagctctgcatggtcccatctggaccacatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcccgagggactgctgacctggtcagccccagctctgcatggtcccatctggaccacatg 323
Query: 125 gcttccttgaccctcagaatcctcatctattagacagaggagccagatgacggggagatg 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 gcttccttgaccctcagaatcctcatctattagacagaggagtcagatgacggggagatg 383
Query: 185 tccatcatgtctcctggtatgggatcgtgatgaggacatttggctccaagctcccttttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccatcatgtctcctggtatgggatcgtgatgaggacatttggctccaagctcccttttc 443
Query: 245 tactgctcttttcctcttcacatctttcttgtaagaagaggctccacatttgtggagggt 304
||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 444 tactgctctttccctcttcacatctttcttggaagaagaggctccacatctgtggagggt 503
Query: 305 ctactatgtgctagcaaatcctctgcattcctggcttctactgcagcagccataaatgca 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 ctactatgtgctagcaaatcctctgcattcctggcctctactgcagcagccataaatgca 563
Query: 365 tttgctccaactccttagatagcaaatggaggctttgatacgatagctgtgcagggtggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttgctccaactccttagatagcaaatggaggctttgatacgatagctgtgcagggtggt 623
Query: 425 ctgcctggcgccagcgctcaaccctcccactgtctccaggaaacatccccaggagcccct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgcctggcgccagcgctcaaccctcccactgtctccaggaaacatccccaggagcccct 683
Query: 485 aatcccccatttatttaggacttggg 510
||||||||||||||||||||||||||
Sbjct: 684 aatcccccatttatttaggacttggg 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 909
Length adjustment: 10
Effective length of query: 500
Effective length of database: 899
Effective search space: 449500
Effective search space used: 449500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_d04.g1 MSMg01no352_d04.g1 CHROMAT_FILE:
MSMg01no352_d04.g1 PHD_FILE: MSMg01no352_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:39 2005
(149 letters)
>mm_chr5_33510091_33510640
Length = 550
Score = 211 bits (109), Expect = 2e-59
Identities = 135/145 (93%), Gaps = 5/145 (3%)
Strand = Plus / Minus
Query: 1 atttaggaattcatttatatcagct--gagtcagatgccttattctttgagctttattta 58
||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 301 attta-gaattcatttatatcagctgagagtcagatgccttattctttgagttttattta 243
Query: 59 aatactttgctttttatcattatcaatttggttgtgcatgtgccttcgtgcatgtgtgca 118
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct: 242 aatactttgctttttatcattatcaatttggttgtgcatgtgtctgcatgcatgtgtgca 183
Query: 119 tgtgtg--tgtgtgtgtgtgtgtgt 141
|||||| ||||||||||| |||||
Sbjct: 182 tgtgtgcatgtgtgtgtgtctgtgt 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 550
Length adjustment: 8
Effective length of query: 141
Effective length of database: 542
Effective search space: 76422
Effective search space used: 76422
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
