Query= MSMg01no352_i17.b1 MSMg01no352_i17.b1 CHROMAT_FILE:
MSMg01no352_i17.b1 PHD_FILE: MSMg01no352_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:08 2005
(514 letters)
>mm_chr5_89383280_89384191
Length = 912
Score = 940 bits (486), Expect = 0.0
Identities = 504/510 (98%), Gaps = 2/510 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgatttcccgtttgctaactctttgatttttcataaacctaagatctaaactt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgatttccagtttgctaactctttgatttttcataaacctaagatctaaactt 264
Query: 65 tatcctgtggggacagaatttgagtacgccctcacagaaccaagtaccagccagtggatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatcctgtggggacagaatttgagtacgccctcacagaaccaagtaccagccagtggatg 324
Query: 125 gaattgtaccatagcagagtgaaatttgaaaagaggctcagttttgttttttcttttaaa 184
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 325 gaattgtaccatagcagagtgaaatttgaaaagaggctcagtttt-tttttt-ttttaaa 382
Query: 185 cacaaactcaattctttcagttggttaaatacagagtgataatgtcacactcacagactt 244
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cacaaactcagttcttttagttggttaaatacagagtgataatgtcacactcacagactt 442
Query: 245 ctctggcctgtggttcctgtgtaatttatgtgtagaaatatcatgggttgaaatgaccgt 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 443 ctctggcctgtggttcctgtgtaatttaagtgtagaaatatcatgggttgaaatgaccgt 502
Query: 305 tgacttgtctaccgtccttaggtcaccacacgatctacattggggtccatgtgcccaaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgacttgtctaccgtccttaggtcaccacacgatctacattggggtccatgtgcccaaga 562
Query: 365 gctaccggagaaggagacgccacaagaggaaggctgggcacaaggaaaagaaggaaaagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gctaccggagaaggagacgccacaagaggaaggctgggcacaaggaaaagaaggaaaagg 622
Query: 425 agagaatctccgagaactactccgacaaatctgatgtggagaatgcggatgagtccagca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agagaatctccgagaactactccgacaaatctgatgtggagaatgcggatgagtccagca 682
Query: 485 gcagtatcctcaaacccctcagtgagtact 514
||||||||||||||||||||||||||||||
Sbjct: 683 gcagtatcctcaaacccctcagtgagtact 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 912
Length adjustment: 10
Effective length of query: 504
Effective length of database: 902
Effective search space: 454608
Effective search space used: 454608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_i17.g1 MSMg01no352_i17.g1 CHROMAT_FILE:
MSMg01no352_i17.g1 PHD_FILE: MSMg01no352_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:08 2005
(421 letters)
>mm_chr5_89601049_89601869
Length = 821
Score = 775 bits (401), Expect = 0.0
Identities = 416/421 (98%)
Strand = Plus / Minus
Query: 1 atcagcgacagcgcctctcaaagcttcttttcggtgactatgtaaagaatttgttatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcagcgacagcgcctctcaaagcttcttttcggtgactatgtaaagaatttgttatgga 562
Query: 61 gcgagaaacaggcagcaatgcacccacaggaaaagtggcagaagtgaagatgaaaggatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcgagaaacaggcagcaatgcacccacaggaaaagtggcagaagtgaagatgaaaggatt 502
Query: 121 tcagtaacaaatgagaagacttggaaatacttccttcatccttcccagaatgcccctctt 180
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 501 tcagtaacaaatgagaagacttggaaatacttccttcatccgtcccggaatgcccctctt 442
Query: 181 tcctgctctttcccctgagacatgcctactgcacaggaggagagcttgtctcactgctaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgctctttcccctgagacatgcctactgcacaggaggagagcttgtctcactgctaa 382
Query: 241 tgaggatgaagggagaggccttttctcctctcacacctggttcctggggccttaggagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggatgaagggagaggccttttctcctctcacacctggttcctggggccttaggagag 322
Query: 301 gaaggctccctggccaggggctgcagggcaccttgactgacccttctctcatagcttaat 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gaaggctccctggccaggggctgcagggcaccttgactgaaccttctctcatagcttaat 262
Query: 361 tatgggtgaaaggaaaaggaaaattaagtcctgatgactgtgtgtcccaggaagagtaca 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatggatgaaaggaaaaggaaaattaagtcctgatgactgtgtgtcccaggaagagtaca 202
Query: 421 g 421
|
Sbjct: 201 g 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
