BAC Information

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BAC

Clone NameMSMg01-353A16
Chromosome5 (Build37)
Map Location 86,324,800 - 86,325,185
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353A16.T7 (MSMg01no353_a16.b1)MSMg01-353A16.TJ (MSMg01no353_a16.g1)
ACCAG464019AG464020
length776786
length of high quality
(start - end)		496 (52 - 547)388 (82 - 469)
definitionCHROMAT_FILE: MSMg01no353_a16.b1 PHD_FILE: MSMg01no353_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:47 2005CHROMAT_FILE: MSMg01no353_a16.g1 PHD_FILE: MSMg01no353_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATAATCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCGGCTCTGAGCCCCATTTTTAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATAGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGACATCATCCTGAGTGAGGTAACCCAATCACAAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTT
AAGATACCCAAGATATAAGATACAATTTGCAAAACACATGAAACTCAAGA
AGAATGAAGACCAAAGTGTGGATACTTTGCCCCTTCTTAGAATTGGGAAC
AAAACACCCATGGAAGGAGTTACAGAGACAAAGCTTGGAGCTGTGATGGA
AGGATGGACCATCTAGAGACTTCCATATCCAGGGATCCATCCCATAATCA
GCCTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAG
GACCCAGATATAGCTGTCTCTTGTGAGACTATGCCNGAAGCCTAGCAACA
CAGAAGTGGATGCTCACAGTCAGCTATTGTATGGACCACAGGGCCCCCCA
TGTAAGGACCANAAGAAGTACCCACCGAGCTTAAGGGATCTGCACCCCTA
ATAGTGGAACAACCATATGAACTATTCTGTACCCCCCCTGGTCTCTATTT
GGTTATGAATCCAAAAATGGCCAAGT

NNNNNAACAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTTCTGGAGTGGCCAA
TGGAGCAAATTCATAGCTTTTGACGTTGTGTTGGAGAATGGCACAGTTCA
TAGGTTTGTGGGAAACCAGAAGTTTTAGAAGCTTCAATTCCCTAACATGA
CAATCTGTGAGATGCCAAAATTCAATTATGAAAGGCTTCTGGCAGAGCTG
TTTTGCAGTCATATTACTTGTTTGGCTACTAGGCACCAATCATGGGATTT
TTCATGGTTAGAAAAGAAAAAACAGGCAGTGATTTGCATGTCATCTCAGT
CTGTGATTCTGACATGTATGGCCTCAACCCATTGTTTTAATGAAAATGTA
GTTTTCTTTTCCTTTTGTTAAATTTTTTTTTGTATTAAATTATGTGTGTT
TGGGTATGTATGTGTGNGTGATTATCNACGTCCATANACCCCTTAATAGT
GTTTCATGTATCCTTTATCCTTGTCTTTCAGTTTTTCCTTCCCCTTATTT
TCCTCCCACTCCTTCCCCTCTTCCCCCTGTTACATTCCTTTCCCCTTTCT
CTTCCCTCCCGTGTTCCCTTTCCATATATTTTCCTTTCCCTTCCTCTTTC
CCTGTCCCTTTTCTTTCTTCTCCTTCTTCCCCTTCTTTCCCTTACTTTTC
CTTTTTTCCCTTTTTTTCTATTCTTCCCCTTTCCTTTTCCCTTTCCCCTT
TTTTCCTTTCTTTTTCCCATTCCTTATTTTCCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_a16.g1 MSMg01no353_a16.g1 CHROMAT_FILE:
MSMg01no353_a16.g1 PHD_FILE: MSMg01no353_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:47 2005
         (388 letters)



>mm_chr5_86324600_86325388
          Length = 789

 Score =  731 bits (378), Expect = 0.0
 Identities = 384/386 (99%), Gaps = 1/386 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtttctggagtggccaatggagcaaattcatagcttttgacgttgtgttggagaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aggtttctggagtggccaatggagcaaattcatagcttttgacgttgtgttggagaatgg 527

                                                                       
Query: 61  cacagttcataggtttgtgggaaaccagaagttttagaagcttcaattccctaacatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cacagttcataggtttgtgggaaaccagaagttttagaagcttcaattccctaacatgac 467

                                                                       
Query: 121 aatctgtgagatgccaaaattcaattatgaaaggcttctggcagagctgttttgcagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 466 aatctgtgagatgccaaaattcaattatgaaaggcttctggcagaactgttttgcagtca 407

                                                                       
Query: 181 tattacttgtttggctactaggcaccaatcatgggatttttcatggttagaaaagaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tattacttgtttggctactaggcaccaatcatgggatttttcatggttagaaaagaaaaa 347

                                                                       
Query: 241 acaggcagtgatttgcatgtcatctcagtctgtgattctgacatgtatggcctcaaccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 acaggcagtgatttgcatgtcatctcagtctgtgattctgacatgtatggcctcaaccca 287

                                                                       
Query: 301 ttgttttaatgaaaatgtagttttcttttccttttgttaaa-tttttttttgtattaaat 359
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 286 ttgttttaatgaaaatgtagttttcttttccttttgttaaattttttttttgtattaaat 227

                                     
Query: 360 tatgtgtgtttgggtatgtatgtgtg 385
           ||||||||||||||||||||||||||
Sbjct: 226 tatgtgtgtttgggtatgtatgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 789
Length adjustment: 9
Effective length of query: 379
Effective length of database: 780
Effective search space:   295620
Effective search space used:   295620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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