BAC Information

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BAC

Clone NameMSMg01-354I22
Chromosome5 (Build37)
Map Location 91,957,930 - 92,131,892
singlet/doubletdoublet
Overlap gene9130213B05Rik
Upstream geneAfm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc
Downstream geneEG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354I22.T7 (MSMg01no354_i22.b1)MSMg01-354I22.TJ (MSMg01no354_i22.g1)
ACCAG465157AG465158
length773811
length of high quality
(start - end)		527 (45 - 571)418 (76 - 493)
definitionCHROMAT_FILE: MSMg01no354_i22.b1 PHD_FILE: MSMg01no354_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:44 2005CHROMAT_FILE: MSMg01no354_i22.g1 PHD_FILE: MSMg01no354_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,957,930 - 91,958,453)(92,131,567 - 92,131,892)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACACAGTGACTTAAAAGTCTTTTTGATGGAGCCTTTAAAAATA
ACACCATAGAGAGGCAAGTCGCCTCAGAAAGGCTTGCAGGGCAGCACTGA
CATAATGGGCAGAGAAGGTTCTGGAAAAGAATGACAACATAATAATGCTA
CGTTTTCTAAAGCTCACGTGATATATAAGGCATTCCTGAGGACCACCATC
TTGGATCATCAAGGTGCTCTGAGAGCTATCAGATCAGCACTTAAGGAATG
TTAGAGTTCTCTTCCTCTAAAAACTAAAATCTCTTCAGCATATGGGATCT
ACTTTTTTTAAAAAAACATCCTAAGTTTCTCAAAGTGAAAGTTGTCGACT
GAGATATCAAGTAAGAAAAATATGCCTCAGAAGAATATATTATTTATTTA
TTTCCTTTGGCAACATTCAATATATGATATCATCTTTTCAATAAAGCAAT
CAATAAAATGTGGTTTAGGAAGATGCTAGAGGAGCCATTATTAATCCTCT
GCAGCAGTTTTAGAGAATAATGCAGGTGTGCTGGAGACACTGCTGTATAG
GCAGATAGGACAAGAAGCAGCAGAGGCCTGATTTCCAGCCACTCCTTCAA
TTTTCGACAAACTGTGGACATCGATTGGAACCCACCTGTTACTTTTTAGC
CTTAAGGGGGACCCCCGACACTCTGGGGTTCCCCCCCTACAGAATCANCG
AGACCCCACTATCCTCATCAAGA

CCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTACTGTAGTCCTTCTTTCAGAAA
AGTAGCACAGAATATATGGACCTGACTTTGCAACAGTATATGTAAATAAG
ATTCCTGAATTTTAATGAATATTAAGATTGCACCAACCACTTGATGTGAT
CTACAAAAAGAAAGAAAGAGGAAGTTGTAAATGCACTATTCTTTTTAGAA
TAAAGAGGATGTTAGTTCTGTTCCACTATATTTTTTGCTCAGACCACAAG
TGAGATACTTCATGCAGTGATAAGCACTATAGTTTAAGAGAATAATAAAA
AATTAGAGCATTGTCCAAGATTTGCATTCCCTTGGGAAGGGAAAGCAGTA
CTTCATAAGAATATGTCATAAGTCATAATTTGTACAAAGCATTATGTTAA
GAACTTAACTTGCATAACAAATTAATTCCTACACTAACACTGTAAGTTAT
GTGTTTTTATGACCATTTATATGTGAGGATACTGAATCACAGAGTAGAGG
GGTTTTTTTTTTTTGGTTTCTTTACTTTTTCCTTTTTTACAAGAAATATT
GGTTGGAATATTCCCCAAAATTGTAAAAATTGTGAAAAACCCCGATTTTT
ACCTAATTCATTTTGGTCCCAAATTAAATTTCCCTCTCCCCACACCCACG
TTTGGATGGGGGGGACAACCCTTTACTCTTGTGTTTTTGTTGGGCGGGGG
ATTTGCATATCCCCGGCTCGACTCCTTTTTTCTTCCCCTTCCATTCTCCC
TTCCTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_i22.b1 MSMg01no354_i22.b1 CHROMAT_FILE:
MSMg01no354_i22.b1 PHD_FILE: MSMg01no354_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:44 2005
         (527 letters)



>mm_chr5_91957727_91958653
          Length = 927

 Score =  951 bits (492), Expect = 0.0
 Identities = 516/524 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcaacacagtgacttaaaagtctttttgatggagcctttaaaaataacaccat 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 ggaattctcaacacagtgacttaaaagtctttttgatggagcctttaaaaataaaaccat 263

                                                                       
Query: 64  agagaggcaagtcgcctcagaaaggcttgcagggcagcactgacataatgggcagagaag 123
           ||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 264 agagaggcaagtcacctcagaaaggcttgcagggcagcactgatgtaatgggcagagaag 323

                                                                       
Query: 124 gttctggaaaagaatgacaacataataatgctacgttttctaaagctcacgtgatatata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttctggaaaagaatgacaacataataatgctacgttttctaaagctcacgtgatatata 383

                                                                       
Query: 184 aggcattcctgaggaccaccatcttggatcatcaaggtgctctgagagctatcagatcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggcattcctgaggaccaccatcttggatcatcaaggtgctctgagagctatcagatcag 443

                                                                       
Query: 244 cacttaaggaatgttagagttctcttcctctaaaaactaaaatctcttcagcatatggga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cacttaaggaatgttagagttctcttcctctaaaaactaaaatctcttcagcatatggga 503

                                                                       
Query: 304 tctactttttttaaaaaaacatcctaagtttctcaaagtgaaagttgtcgactgagatat 363
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 tctacttttttcaaataaacatcctaagtttctcaaagtgaaagttgtcgacttagatat 563

                                                                       
Query: 364 caagtaagaaaaatatgcctcagaagaatatattatttatttatttcctttggcaacatt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caagtaagaaaaatatgcctcagaagaatatattatttatttatttcctttggcaacatt 623

                                                                       
Query: 424 caatatatgatatcatcttttcaataaagcaatcaataaaatgtggtttaggaagatgct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caatatatgatatcatcttttcaataaagcaatcaataaaatgtggtttaggaagatgct 683

                                                       
Query: 484 agaggagccattattaatcctctgcagcagttttagagaataat 527
           ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 684 agaggagccattattaatcctctgcagcatttttagagaataat 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_i22.g1 MSMg01no354_i22.g1 CHROMAT_FILE:
MSMg01no354_i22.g1 PHD_FILE: MSMg01no354_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:44 2005
         (418 letters)



>mm_chr5_92131075_92131892
          Length = 818

 Score =  607 bits (314), Expect = e-178
 Identities = 323/326 (99%)
 Strand = Plus / Minus

                                                                       
Query: 93  aatattaagattgcaccaaccacttgatgtgatctacaaaaagaaagaaagaggaagttg 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 aatattaagattgcaccaaccacttgatgtgatctacaaaaagaaagaaagaggaagttg 759

                                                                       
Query: 153 taaatgcactattctttttagaataaagaggatgttagttctgttccactatattttttg 212
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 758 taaatgcattattctttttagaataaagaggatgttagttctattccactatattttttg 699

                                                                       
Query: 213 ctcagaccacaagtgagatacttcatgcagtgataagcactatagtttaagagaataata 272
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 698 ctcagaccacaagtgagatacttcatgcagtggtaagcactatagtttaagagaataata 639

                                                                       
Query: 273 aaaaattagagcattgtccaagatttgcattcccttgggaagggaaagcagtacttcata 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aaaaattagagcattgtccaagatttgcattcccttgggaagggaaagcagtacttcata 579

                                                                       
Query: 333 agaatatgtcataagtcataatttgtacaaagcattatgttaagaacttaacttgcataa 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agaatatgtcataagtcataatttgtacaaagcattatgttaagaacttaacttgcataa 519

                                     
Query: 393 caaattaattcctacactaacactgt 418
           ||||||||||||||||||||||||||
Sbjct: 518 caaattaattcctacactaacactgt 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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