Query= MSMg01no354_k22.b1 MSMg01no354_k22.b1 CHROMAT_FILE:
MSMg01no354_k22.b1 PHD_FILE: MSMg01no354_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:54 2005
(547 letters)
>mm_chr5_20146275_20147221
Length = 947
Score = 1027 bits (531), Expect = 0.0
Identities = 540/543 (99%)
Strand = Plus / Minus
Query: 4 ggaattccaatagggttgggatgctattttgattttatgattttagatgaaatctttagg 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ggaattccaatagggcagggatgctattttgattttatgattttagatgaaatctttagg 687
Query: 64 aagagaggctcgccaagtgcttggcaggtagtttagaccttgagttaatacaaagaaatc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aagagaggctcgccaagtgcttggcaggtagtttagaccttgagttaatacaaagaaatc 627
Query: 124 agtacaagcaatagaatgcagagacggagagtttaaaggcaagcttgctgaagcagaaat 183
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 626 agtacaagcaatagaatgcagagacagagagtttaaaggcaagcttgctgaagcagaaat 567
Query: 184 agtttctacaaaggaaaaaaaatataagcagccccattccattttcagatgctcatttaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agtttctacaaaggaaaaaaaatataagcagccccattccattttcagatgctcatttaa 507
Query: 244 ctgttcaggcaagaagagaccgggtaatatcttaaaatcacctgcctgagccggagtggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctgttcaggcaagaagagaccgggtaatatcttaaaatcacctgcctgagccggagtggg 447
Query: 304 aggctctcacgacagcccagccggcagcttctactgctgctcagaaatcacttacgttag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aggctctcacgacagcccagccggcagcttctactgctgctcagaaatcacttacgttag 387
Query: 364 gtcatgaagccagtctgcctagttgattgaaaaataaacaaaaagaaaatcacaaggagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtcatgaagccagtctgcctagttgattgaaaaataaacaaaaagaaaatcacaaggagt 327
Query: 424 ctctaactgtggactgtgtgtgggctgtcattttccttcccttcatgtgattgggagcaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctctaactgtggactgtgtgtgggctgtcattttccttcccttcatgtgattgggagcaa 267
Query: 484 aacagactatcattccgcatacttgcctaatcagatatacttattttccagacccggtca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aacagactatcattccgcatacttgcctaatcagatatacttattttccagacccggtca 207
Query: 544 cca 546
|||
Sbjct: 206 cca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_k22.g1 MSMg01no354_k22.g1 CHROMAT_FILE:
MSMg01no354_k22.g1 PHD_FILE: MSMg01no354_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:54 2005
(419 letters)
>mm_chr5_19969984_19970802
Length = 819
Score = 735 bits (380), Expect = 0.0
Identities = 416/442 (94%), Gaps = 23/442 (5%)
Strand = Plus / Plus
Query: 1 tggttgcctcacatttagggaaaatggctgttaatcaaaccaacgatgttgagggcattt 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tggttgcctcacatttaggaaaaatggctgttaatcaaaccaacgatgttgagggcattt 250
Query: 61 ttcttaggaatttttactactagaactactcatttataagtacattggatatatatat-- 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttcttaggaatttttactactagaactactcatttataagtacattggatatatatatat 310
Query: 119 --------acctaaaaacgtatttagttttttaaattttttggtgtttgttgtcttgatg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atatatacacctaaaaacgtatttagttttttaaattttttggtgtttgttgtcttgatg 370
Query: 171 gatgaggatatctcagagagaaatccctggccatttgtactacgcagttcaaaactccat 230
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 371 gatgaggatatctcagagagaaatccctggccatttgtactacacagttcaaaactccat 430
Query: 231 cagtaaatagatgtctattgagttgccctctgacagtctacaagagcacagctttccttc 290
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 431 cagtaaatagatgtctattgagttgccctctgacagtctacaagagcatagctttccttc 490
Query: 291 ctgatatactcctcagcatcatcagtcacaattttaattttcaagt-------------a 337
|||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 491 ctgatatactcctcagcatcatcagtcacaattttaattttcaagtttaattttcaagta 550
Query: 338 ttatggttcatgaagataaaaatacccacccatgatagaaccagtctccaaaaataaagt 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttatggttcatgaagataaaaatacccacccatgatagaaccagtctccaaaaataaagt 610
Query: 398 tgttattcatgtacaatttaag 419
||||||||||||||||||||||
Sbjct: 611 tgttattcatgtacaatttaag 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
