BAC Information

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BAC

Clone NameMSMg01-354L08
Chromosome5 (Build37)
Map Location 87,853,098 - 87,853,671
singlet/doubletsinglet
Overlap geneUgt2b38
Upstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818
Downstream geneUgt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354L08.T7 (MSMg01no354_l08.b1)MSMg01-354L08.TJ (MSMg01no354_l08.g1)
ACCAG465271AG465272
length729754
length of high quality
(start - end)		574 (54 - 627)451 (82 - 532)
definitionCHROMAT_FILE: MSMg01no354_l08.b1 PHD_FILE: MSMg01no354_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:56 2005CHROMAT_FILE: MSMg01no354_l08.g1 PHD_FILE: MSMg01no354_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:56 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNNNNNTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATCGGCCACACCAACACTTTCCCACATTTCACAGAT
CTGAAGCAGCAACTTATCTGCAGCAGCAACAGAGCAGAAATCCACATTCC
AGGCATCCTGAAAATCAAAATCCTTCTCTTCACAGTTCATTTGCTTCTGT
CACTGCTTGACCTTTTATCCAAGAAGCTTCAGCCCAGAGGTTAAACTATA
ACTTGCATTTCCCAGAGCTGATAATTAAAAGACCAGAACTAAGGTTTTGG
GAAAAGAATCGAAGAATGATTTCAATTATTCCCTGTTTACATGAGAGTGA
GTCACGTCTCTTATGATGGCATGTTTTCAAATAGCCAAGAAATAATGATG
TCATGTTCAATTATTAATGGGATATTAGAATATTCTAAGATGTCTCACAA
AACTAGTGACATCATAATATGGCTGATCTCTGAATTCTCCTCTATATGGC
CTTGANAGCTTATTAATTTACATAGTTGAATGTCATGATGACTCTTCCCT
TTCCTTTAATGTGACCAATTATTCTGACTAAATCATGGACTGTTCTAATA
ATCAATCCAATATTAGAAATAACAGACTTCATTTANAAGGCTGGTTCTAG
ACAGTTTTAGAGACATATTTGAAAGTTAGCTACAGTTTTCTATGATGATA
TTGTTACAATAGAATGGGGACGGGTTTAG

NNNNNNNCCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCATTGGATGAACATAA
AAATAATACTGGATGAACTGGTACAGAGGGGCCATGAAGTCACTGTTCTG
AGACCTTCAGCTTACTATGTTCTTGATCCCAAAAAATCACCTGGCCTTAA
GTTTGAAACTTTTCCTACATCTGTCAGTAAAGACAATCTGGAAAATTTTT
TCATTAAGTTTGTGGATGTGTGGACTTATGAGATGCCAAGGGATACATGT
TTGTCATATTCTCCTTTACTGCAAAATATATTTGATGAATTTTCTGATTA
TTTTCTAAGTCTTTGTAAAGATGTTATTTCAAACAAAGAGCTCATGACAA
AGCTACAGGAATCCAAGTTTGATGTGCTTTTGTCAGATCCTGTTGCTTCC
TGTGGGGAGCTTATAGCTGAACTGCTCCAGATTCCTTTTCTGTACAGTAT
CCGCTTCTCTCCAGGCTACCAAATTGAAAAGTCCAGCGGGAGATTTCTAC
TCCCTCCCTCTTATGTACCTGTAAATCTGTCAGGATTAGGTGGACAAATG
ACTTTCTATAGAGAGGAAAAAAAATGATATGCGGGCTTTAATTTGACTTT
TGGTCCCCAAGGTTAAGGAAAAAAAATGGAACCCTTTTCTCGGGAAATTT
GGGGAAGTAAATTTTTTTTTTTTTGGTTGAAACCCAAATTTCCAAGAATG
GGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_l08.b1 MSMg01no354_l08.b1 CHROMAT_FILE:
MSMg01no354_l08.b1 PHD_FILE: MSMg01no354_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:56 2005
         (574 letters)



>mm_chr5_87852894_87853873
          Length = 980

 Score =  876 bits (453), Expect = 0.0
 Identities = 541/574 (94%), Gaps = 6/574 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcggccacaccaacactttcccacatttcacagatctgaagcagcaacttat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcggccacaccaacactttcccacatttcacagatctgaagcagcaacttat 264

                                                                       
Query: 65  ctgcagcagcaacagagcagaaatccacattccaggcatcctgaaaatcaaaatccttct 124
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 ctgcagcagcagcagagcagaaatccactttccaggcatcctgaaaatcaaaatccttct 324

                                                                       
Query: 125 cttcacagttcatttgcttctgtcactgcttgaccttttatccaagaagcttcagcccag 184
           ||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttcacagtccatttacttttgtcactgcttgaccttttatccaagaagcttcagcccag 384

                                                                       
Query: 185 aggttaaactataacttgcatttcccagagctgataattaaaagaccagaactaaggttt 244
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  
Sbjct: 385 aggttaaactataacttgcatttcccagagctgataattaaatgaccagaactatggtga 444

                                                                       
Query: 245 tgggaaaagaatcgaagaatgatttcaattattccctgtttacatgagagtgagtcacgt 304
           |||||||| ||| |||||||||||||||||| ||||||||||||||||||||| ||| ||
Sbjct: 445 tgggaaaataattgaagaatgatttcaattaatccctgtttacatgagagtgattcatgt 504

                                                                       
Query: 305 ctcttatgatggcatgttttcaaatagccaagaaataatgatgtcatgttcaattattaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcttatgatggcatgttttcaaatagccaagaaataatgatgtcatgttcaattattaa 564

                                                                       
Query: 365 tgg------gatattagaatattctaagatgtctcacaaaactagtgacatcataatatg 418
           |||      ||||||| |||||||||| |||||||| |||||||||||| ||||||||||
Sbjct: 565 tggtacgtagatattaaaatattctaaaatgtctcataaaactagtgacctcataatatg 624

                                                                       
Query: 419 gctgatctctgaattctcctctatatggccttganagcttattaatttacatagttgaat 478
           |||| |||||||||||||||||||||| |||||| | | ||||||||||||||||| |||
Sbjct: 625 gctggtctctgaattctcctctatatgaccttgaaaacatattaatttacatagttaaat 684

                                                                       
Query: 479 gtcatgatgactcttccctttcctttaatgtgaccaattattctgactaaatcatggact 538
           |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 685 gtcatgatgattcttccctttcctttaatgtgaccaattattctgattcaatcatggact 744

                                             
Query: 539 gttctaataatcaatccaatattagaaataacag 572
           ||||||||||||||||||||||||||||||||||
Sbjct: 745 gttctaataatcaatccaatattagaaataacag 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 980
Length adjustment: 10
Effective length of query: 564
Effective length of database: 970
Effective search space:   547080
Effective search space used:   547080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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