BAC Information

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BAC

Clone NameMSMg01-354L16
Chromosome5 (Build37)
Map Location 4,784,165 - 4,784,666
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678
Downstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354L16.T7 (MSMg01no354_l16.b1)MSMg01-354L16.TJ (MSMg01no354_l16.g1)
ACCAG465287AG465288
length765780
length of high quality
(start - end)
539 (42 - 580)328 (77 - 404)
definitionCHROMAT_FILE: MSMg01no354_l16.b1 PHD_FILE: MSMg01no354_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:58 2005CHROMAT_FILE: MSMg01no354_l16.g1 PHD_FILE: MSMg01no354_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCTTTAGTGTCCTGACTGGATTACATATATATAAAACAAAGAATGGA
CTATGGAATGAATTGCTGTTAAACCATCTCTCATGGACTTTTTTATATAT
AAATCTACTTTACATCAATAGGAATGTTTACATTTGTTTGTGTTTCACAG
CTTGTAAAAGGTGGGTTAAAACACACACACACAAACACACACAGAGAGAG
AGAGGCATTAAAAACATTCAAAACTAAAAATACAGGAGCTGGGTAGATGA
CTTGGTGGTTCAGGTACTTGCTATACAAGTGTGAGGATTAGAATTTAGTT
CCTCCAAAACCCATATTGGGTGGGCAGGATGAGAGATCTGTAATTCCAGT
CTTAGAATTTGGAGATGAGTGATCCCTAGGGCAATCTGGCAAGCTAGACT
AGTCATATAGGCAAGCTCTACATTTGGTTGAGAAACCCTGCATCAATCAA
AAGGTAGAAGAGTGATTGAGGCTTCCGACATCAACCTTCAACCGCTTCGT
GCACTTGTATATGCATTTATAAACAATGCGTCCACACACAGTCAAAACAT
GCAACAGGCATACTCTGATAGATAGAGAGAGAAATGATATATAGAGATAT
TGACAGAGATAGATTTATACACATATACAGATCTATATATATATACATTA
CTATCTTTTTTTCTCCTTCCCTCTTTTTTTCTCCTTTTTCTTCTTCCCCC
CTTTTTCTCTCTCTC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGAAGTTTCCAGAAGATGCATA
GATGCTAGGCTCCCGAGATGCAGGGGAGGTGGTAGTTGGTCATTAAGGGA
GGTTGGTTGAGGCTTGTTAGTAGCCATAGCCAAAGAAAAACCAAAGAAAT
AAGTTAGATGCAGGGCTTTCTTTTTATTCTATCCTTGTTTCTCTCCTATC
TAGTATTAGGGAGTGAAACCGAGGGGATAAAGGGTGGAAAAAAGAAGAAC
CCACAAAGTAGCAAAGGCCAGCTACACAATTCCTCTATTTCCACGTCAAG
TCACTGATGAAATGCTGAAGAGGGGGCTGTCGTGTATATATGGGTACACT
TACACGATACATACCCGCCCAGACACATTTTCATATATGTGTGTGCTGAA
AGGGACAGAACGACAAAGGGTATTCCTGGAGACTTCCCGTTCCTCTGGGA
GCCAGAAATTTCATTTTCTGATACCTAAACCGTTGTCTTCTTTGCCTAGC
GTTTTGTTCTTGAAATGATCCTCTTTGTACTTCTACTTCCTCCCCTTGTT
CTTCTCTCTCTCTCCACTTTGCTTCTTTTCAACCTTCTCAACTGTCCTAC
TCTCCCTTTATTGTTCGCTCCTCCTACCGTGGGTTCTTCTTGCTCCCCGN
CTTCCGCATCTAATCTCTTTCTCCCCCTTTTTCTTTTCGCTGTTCCTCCC
CCTACATCTCTCCCTTCCCCTTTGGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_l16.b1 MSMg01no354_l16.b1 CHROMAT_FILE:
MSMg01no354_l16.b1 PHD_FILE: MSMg01no354_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:58 2005
         (539 letters)



>mm_chr5_4783929_4784868
          Length = 940

 Score =  930 bits (481), Expect = 0.0
 Identities = 497/503 (98%), Gaps = 3/503 (0%)
 Strand = Plus / Plus

                                                                       
Query: 37  atatatataaaacaaagaatggactatggaatgaattgctgttaaaccatctctcatgga 96
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 atatatataaaacaaagaatggactatggaatgaattgctgttaaaccatctctcatgga 296

                                                                       
Query: 97  cttttttatatataaatctactttacatcaataggaatgtttacatttgtttgtgtttca 156
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 c-gttttatatataaatctactttacatcaataggaatgtttacatttgtttgtgtttca 355

                                                                       
Query: 157 cagcttgtaaaaggtgggttaaaacacacacacacaa--acacacacagagagagagagg 214
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 356 cagcttgtaaaaggtgggttaaaacacacacacacaaacacacacacagagagagagagg 415

                                                                       
Query: 215 cattaaaaacattcaaaactaaaaatacaggagctgggtagatgacttggtggttcaggt 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cattaaaaacattcaaaactaaaaatacaggagctgggtagatgacttggtggttcaggt 475

                                                                       
Query: 275 acttgctatacaagtgtgaggattagaatttagttcctccaaaacccatattgggtgggc 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 acttgctatacaagtgtgaggattagaatttagttcctccaaaacccatattgggtgggc 535

                                                                       
Query: 335 aggatgagagatctgtaattccagtcttagaatttggagatgagtgatccctagggcaat 394
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 536 aggatgagagatctgtaattccagtcttagaatttggagatgagtgatcactagggcaat 595

                                                                       
Query: 395 ctggcaagctagactagtcatataggcaagctctacatttggttgagaaaccctgcatca 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctggcaagctagactagtcatataggcaagctctacatttggttgagaaaccctgcatca 655

                                                                       
Query: 455 atcaaaaggtagaagagtgattgaggcttccgacatcaaccttcaaccgcttcgtgcact 514
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 656 atcaaaaggtagaagagtgattgaggcttccaacatcaaccttcaaccgcttcgtgcact 715

                                  
Query: 515 tgtatatgcatttataaacaatg 537
           |||||||||||||||||||||||
Sbjct: 716 tgtatatgcatttataaacaatg 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 940
Length adjustment: 10
Effective length of query: 529
Effective length of database: 930
Effective search space:   491970
Effective search space used:   491970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)